Variant report

Variant	esv3371395
Chromosome Location	chr10:45842471-45845319
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:143 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535929389	chr10:45842474-45842475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs376327086	chr10:45842475-45842476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs182648955	chr10:45842506-45842507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs185889766	chr10:45842507-45842508	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs190136817	chr10:45842529-45842530	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs7896861	chr10:45842530-45842531	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs544117621	chr10:45842540-45842541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs7896872	chr10:45842567-45842568	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs149744985	chr10:45842576-45842577	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs545742161	chr10:45842577-45842578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs114184029	chr10:45842624-45842625	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs527302418	chr10:45842626-45842627	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs182489634	chr10:45842707-45842708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs570857606	chr10:45842709-45842710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs532022614	chr10:45842716-45842717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs374387254	chr10:45842726-45842727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs12783182	chr10:45842735-45842736	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs187529103	chr10:45842736-45842737	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs527953061	chr10:45842740-45842741	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112865981	chr10:45842765-45842766	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs566132205	chr10:45842771-45842772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs539887503	chr10:45842775-45842776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs7076305	chr10:45842782-45842783	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs577094225	chr10:45842799-45842800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs368203459	chr10:45843814-45843815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs185404531	chr10:45843829-45843830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs56352761	chr10:45843831-45843832	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs113213463	chr10:45843833-45843834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
29	rs139180148	chr10:45843841-45843842	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs552997545	chr10:45843845-45843846	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs578259315	chr10:45843851-45843852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs545356295	chr10:45843860-45843861	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs557605279	chr10:45843869-45843870	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs575766078	chr10:45843883-45843884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs543167085	chr10:45843906-45843907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs375981526	chr10:45843913-45843914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs561092132	chr10:45843931-45843932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs34462692	chr10:45843939-45843940	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs540264096	chr10:45843944-45843945	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs564914278	chr10:45843947-45843948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs34998367	chr10:45843953-45843954	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs34905973	chr10:45843962-45843963	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs551400458	chr10:45843963-45843964	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs115931515	chr10:45843965-45843966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
45	rs530619779	chr10:45843979-45843980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs113829452	chr10:45843992-45843993	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs374877092	chr10:45844015-45844016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs374654850	chr10:45844016-45844017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs546650214	chr10:45844022-45844023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs571284880	chr10:45844023-45844024	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Glioblastoma multiforme	21138945	CNVD
Autism	19287141	CNVD
Intellectual disability	21948486	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45842000-45842800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:45843800-45844200	ZNF genes & repeats	Esophagus	oesophagus
3	chr10:45844200-45848200	Weak transcription	Esophagus	oesophagus

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