Variant report

Variant	esv3372046
Chromosome Location	chr6:63255168-63257791
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr6:63255995-63256465	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FKBP1C-2	chr6:63257332-63257472	NONHSAT113334

Variant related genes	Relation type
ENSG00000217067	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372845261	chr6:63256016-63256017	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs7774548	chr6:63256083-63256084	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs566039080	chr6:63256112-63256113	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs536420194	chr6:63256115-63256116	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs541920146	chr6:63256119-63256120	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs190337050	chr6:63256326-63256327	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs548781349	chr6:63256341-63256342	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs554231748	chr6:63256379-63256380	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs548631151	chr6:63257336-63257337	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs570219759	chr6:63257340-63257341	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs182501262	chr6:63257343-63257344	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs9446610	chr6:63257354-63257355	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs570581452	chr6:63257355-63257356	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs534563883	chr6:63257364-63257365	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs552987382	chr6:63257369-63257370	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs62418218	chr6:63257371-63257372	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs151070529	chr6:63257409-63257410	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs557016817	chr6:63257410-63257411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs575355037	chr6:63257411-63257412	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs111741781	chr6:63257426-63257427	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs114900006	chr6:63257446-63257447	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs567651581	chr6:63257451-63257452	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Schizophrenia	23813976	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links