Variant report

Variant	esv3372148
Chromosome Location	chr6:76310257-76313105
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:559)
CpG islands
(count:368)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:559 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:76311201-76311902	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:76312666-76313021	K562	blood:	n/a	n/a
3	ATF2	chr6:76311636-76312501	GM12878	blood:	n/a	n/a
4	BACH1	chr6:76311710-76311864	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr6:76312675-76312783	K562	blood:	n/a	n/a
6	BCL3	chr6:76311339-76311837	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
7	BCLAF1	chr6:76311198-76312444	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
8	BCLAF1	chr6:76311127-76312480	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
9	BHLHE40	chr6:76311427-76311913	HepG2	liver:	n/a	chr6:76311797-76311813
10	BHLHE40	chr6:76311312-76311822	GM12878	blood:	n/a	chr6:76311797-76311813
11	BHLHE40	chr6:76312095-76312309	K562	blood:	n/a	n/a
12	BHLHE40	chr6:76312070-76312724	GM12878	blood:	n/a	n/a
13	BHLHE40	chr6:76311300-76311866	K562	blood:	n/a	chr6:76311797-76311813
14	BRCA1	chr6:76311656-76311803	GM12878	blood:	n/a	n/a
15	BRCA1	chr6:76311722-76311955	Hela-S3	cervix:	n/a	n/a
16	BRCA1	chr6:76312444-76312611	Hela-S3	cervix:	n/a	n/a
17	CBX3	chr6:76311325-76311786	K562	blood:	n/a	n/a
18	CCNT2	chr6:76311292-76312558	K562	blood:	n/a	n/a
19	CEBPD	chr6:76311299-76311911	HepG2	liver:	n/a	n/a
20	CEBPD	chr6:76311324-76311681	HepG2	liver:	n/a	n/a
21	CEBPD	chr6:76311367-76311829	K562	blood:	n/a	n/a
22	CHD1	chr6:76311135-76313608	H1-hESC	embryonic stem cell:	n/a	n/a
23	CHD1	chr6:76311109-76312731	GM12878	blood:	n/a	n/a
24	CHD2	chr6:76311279-76312032	HepG2	liver:	n/a	n/a
25	CHD2	chr6:76311322-76311733	H1-hESC	embryonic stem cell:	n/a	n/a
26	CHD2	chr6:76311964-76312519	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD2	chr6:76311211-76312790	GM12878	blood:	n/a	n/a
28	CHD2	chr6:76311250-76312798	Hela-S3	cervix:	n/a	n/a
29	CHD2	chr6:76311182-76312448	K562	blood:	n/a	n/a
30	CREB1	chr6:76311168-76312642	GM12878	blood:	n/a	n/a
31	CREB1	chr6:76311419-76312199	H1-hESC	embryonic stem cell:	n/a	n/a
32	CREB1	chr6:76311499-76311950	A549	lung:	n/a	n/a
33	CTBP2	chr6:76311265-76312552	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr6:76312420-76312570	AG04449	skin:	n/a	chr6:76312500-76312510
35	CTCF	chr6:76311750-76311844	GM19238	blood:	n/a	n/a
36	CTCF	chr6:76311780-76311930	GM12871	blood:	n/a	n/a
37	CTCF	chr6:76311659-76311780	MCF-7	breast:	n/a	n/a
38	CTCF	chr6:76312440-76312590	HUVEC	blood vessel:	n/a	chr6:76312500-76312510
39	CTCF	chr6:76312428-76312484	GM12878	blood:	n/a	n/a
40	CTCF	chr6:76311720-76311870	Caco-2	colon:	n/a	n/a
41	CTCF	chr6:76311640-76311699	GM19239	blood:	n/a	n/a
42	CTCF	chr6:76312183-76312284	GM19239	blood:	n/a	n/a
43	CTCF	chr6:76311680-76311830	GM12865	blood:	n/a	n/a
44	CTCF	chr6:76312228-76312396	K562	blood:	n/a	n/a
45	CTCF	chr6:76312220-76312370	AG09319	gingival:	n/a	n/a
46	CTCF	chr6:76312459-76312540	GM12891	blood:	n/a	chr6:76312500-76312510
47	CTCF	chr6:76311780-76311792	GM19239	blood:	n/a	n/a
48	CTCF	chr6:76311845-76311850	GM19238	blood:	n/a	n/a
49	CTCF	chr6:76312280-76312430	HCPEpiC	choroid plexus:	n/a	n/a
50	CTCF	chr6:76311760-76311910	HCM	heart:	n/a	n/a

(count:368 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:76311363-76311413	A549	lung:	n/a
2	chr6:76311636-76311686	LNCaP	prostate:	n/a
3	chr6:76311363-76311413	A549	lung:	n/a
4	chr6:76311636-76311686	LNCaP	prostate:	n/a
5	chr6:76311636-76311686	HRE	kidney:	n/a
6	chr6:76310551-76310601	NHDF-neo	bronchial:	n/a
7	chr6:76311363-76311413	AG10803	skin:	n/a
8	chr6:76312378-76312428	GM12892	blood:	n/a
9	chr6:76311636-76311686	MCF10A-Er-Src	breast:	n/a
10	chr6:76311363-76311413	HCM	heart:	n/a
11	chr6:76311363-76311413	SK-N-SH	brain:	n/a
12	chr6:76311363-76311413	ovcar-3	ovarian:	n/a
13	chr6:76312378-76312428	AG04449	skin:	fetal
14	chr6:76310551-76310601	HEEpiC	esophagus:	n/a
15	chr6:76312378-76312428	RPTEC	kidney:	n/a
16	chr6:76311920-76311970	HepG2	liver:	n/a
17	chr6:76312378-76312428	AG04450	lung:	fetal
18	chr6:76311363-76311413	GM12892	blood:	n/a
19	chr6:76311636-76311686	T-47D	breast:	n/a
20	chr6:76312378-76312428	ovcar-3	ovarian:	n/a
21	chr6:76310551-76310601	Caco-2	colon:	n/a
22	chr6:76311920-76311970	NHDF-neo	bronchial:	n/a
23	chr6:76312378-76312428	HRE	kidney:	n/a
24	chr6:76310551-76310601	NB4	blood:	n/a
25	chr6:76311331-76311381	PrEC	prostate:	n/a
26	chr6:76311363-76311413	PrEC	prostate:	n/a
27	chr6:76311331-76311381	IMR90	lung:	fetal
28	chr6:76311331-76311381	BJ	skin:	n/a
29	chr6:76311363-76311413	HRCEpiC	kidney:	n/a
30	chr6:76311636-76311686	HUVEC	blood vessel:	n/a
31	chr6:76312378-76312428	GM19239	blood:	n/a
32	chr6:76310551-76310601	HPAEpiC	pulmonary alveolar:	n/a
33	chr6:76311920-76311970	AG04450	lung:	fetal
34	chr6:76311920-76311970	NB4	blood:	n/a
35	chr6:76311331-76311381	HUVEC	blood vessel:	n/a
36	chr6:76311636-76311686	H1-hESC	embryonic stem cell:	embryo
37	chr6:76311636-76311686	HPAEpiC	pulmonary alveolar:	n/a
38	chr6:76311920-76311970	Jurkat	blood:	n/a
39	chr6:76312378-76312428	HCM	heart:	n/a
40	chr6:76311363-76311413	GM12891	blood:	n/a
41	chr6:76312378-76312428	HAEpiC	amniotic membrane:	n/a
42	chr6:76311920-76311970	BE2_C	brain:	n/a
43	chr6:76311331-76311381	Hepatocyte	liver:	n/a
44	chr6:76311636-76311686	NHBE	bronchial:	n/a
45	chr6:76310551-76310601	GM12878	blood:	n/a
46	chr6:76311920-76311970	GM06990	blood:	n/a
47	chr6:76311363-76311413	HCF	heart:	n/a
48	chr6:76311636-76311686	HL-60	blood:	n/a
49	chr6:76310551-76310601	ECC-1	luminal epithelium:	n/a
50	chr6:76312378-76312428	HRCEpiC	kidney:	n/a

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:76311276..76313926-chr6:76328791..76332406,4	MCF-7	breast:
2	chr14:21923624..21924407-chr6:76311791..76312313,2	MCF-7	breast:
3	chr6:76312117..76313931-chr6:76346420..76348406,2	K562	blood:
4	chr6:74405547..74407236-chr6:76311267..76312799,2	MCF-7	breast:
5	chr6:75993176..75995308-chr6:76310710..76312367,2	MCF-7	breast:
6	chr17:56735238..56737884-chr6:76312067..76314109,2	MCF-7	breast:
7	chr6:76301594..76304347-chr6:76310698..76312348,3	MCF-7	breast:
8	chr6:76310342..76312305-chr6:76373129..76377244,3	K562	blood:
9	chr6:74229402..74231607-chr6:76310929..76313785,2	K562	blood:
10	chr19:13263750..13264527-chr6:76311154..76312072,2	Hela-S3	cervix:
11	chr6:76312246..76314943-chr6:76370644..76373354,2	MCF-7	breast:
12	chr6:76311042..76312955-chr6:76326997..76330794,3	MCF-7	breast:
13	chr6:76312467..76314027-chr6:76330257..76332737,2	K562	blood:
14	chr19:1247352..1249824-chr6:76310629..76312777,2	MCF-7	breast:
15	chr6:76311833..76313694-chr6:76456932..76459481,3	MCF-7	breast:
16	chr6:76300158..76302964-chr6:76309745..76311544,2	K562	blood:
17	chr20:37554612..37555527-chr6:76311330..76312268,2	Hela-S3	cervix:
18	chr16:56659383..56660167-chr6:76311075..76311920,2	HCT-116	colon:
19	chr6:76311736..76312464-chr6:111195171..111196092,2	Hela-S3	cervix:
20	chr6:74228897..74233348-chr6:76310739..76313863,5	K562	blood:
21	chr17:62658047..62658828-chr6:76312151..76312940,2	Hela-S3	cervix:
22	chr6:76298381..76301021-chr6:76312234..76315010,2	K562	blood:
23	chr6:75953153..75955682-chr6:76309116..76311798,2	K562	blood:
24	chr6:75993142..75995708-chr6:76310246..76313188,4	K562	blood:
25	chr6:76310839..76313480-chr6:76354672..76356986,2	MCF-7	breast:
26	chr6:75952178..75953795-chr6:76311805..76314377,2	K562	blood:
27	chr6:76310717..76312305-chr6:76374454..76377244,2	K562	blood:
28	chr1:149223806..149225375-chr6:76310132..76311971,2	MCF-7	breast:
29	chr6:76310925..76313590-chr6:76457201..76459634,2	K562	blood:
30	chr6:74160313..74162584-chr6:76312067..76314970,2	MCF-7	breast:

No data

Variant related genes	Relation type
SENP6	TF binding region
SENP6	CpG island
ENSG00000100888	chromatin interactions
ENSG00000167470	chromatin interactions
ENSG00000123505	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000169715	chromatin interactions
ENSG00000164430	chromatin interactions
ENSG00000101447	chromatin interactions
ENSG00000225793	chromatin interactions
ENSG00000196586	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000229862	chromatin interactions
ENSG00000252137	chromatin interactions
ENSG00000108854	chromatin interactions
ENSG00000156535	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000112697	chromatin interactions
ENSG00000267598	chromatin interactions
ENSG00000112701	chromatin interactions
ENSG00000231652	chromatin interactions
ENSG00000112695	chromatin interactions

Extended variants
information (count: 112 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575458267	chr6:76310260-76310261	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs149721851	chr6:76310274-76310275	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs571538698	chr6:76310284-76310285	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs560972814	chr6:76310324-76310325	Enhancers Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs192667670	chr6:76310369-76310370	Enhancers Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs113244790	chr6:76310375-76310376	Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
7	rs559864309	chr6:76310401-76310402	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
8	rs11967957	chr6:76310519-76310520	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs139661720	chr6:76310567-76310568	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
10	rs569995688	chr6:76310627-76310628	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
11	rs537349766	chr6:76310734-76310735	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
12	rs549640228	chr6:76310748-76310749	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
13	rs567551305	chr6:76310775-76310776	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
14	rs184523801	chr6:76310785-76310786	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
15	rs553121124	chr6:76310788-76310789	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
16	rs188670250	chr6:76310811-76310812	Flanking Active TSS Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
17	rs11756013	chr6:76310845-76310846	Flanking Active TSS Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs373177804	chr6:76310862-76310863	Flanking Active TSS Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
19	rs556685897	chr6:76310878-76310879	Flanking Active TSS Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
20	rs532738796	chr6:76310882-76310883	Flanking Active TSS Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
21	rs35436655	chr6:76311018-76311019	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
22	rs398085037	chr6:76311028-76311029	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
23	rs397888163	chr6:76311029-76311030	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
24	rs35691876	chr6:76311096-76311097	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
25	rs555658298	chr6:76311103-76311104	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
26	rs145493469	chr6:76311133-76311134	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
27	rs542597458	chr6:76311161-76311162	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
28	rs561150716	chr6:76311210-76311211	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
29	rs191800695	chr6:76311241-76311242	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
30	rs184370608	chr6:76311290-76311291	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
31	rs565041625	chr6:76311319-76311320	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
32	rs533476695	chr6:76311326-76311327	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
33	rs370360870	chr6:76311350-76311351	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
34	rs140503602	chr6:76311351-76311352	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
35	rs144868217	chr6:76311352-76311353	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
36	rs145725617	chr6:76311353-76311354	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
37	rs138865221	chr6:76311354-76311355	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
38	rs139459864	chr6:76311355-76311356	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
39	rs534951383	chr6:76311356-76311357	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
40	rs572147704	chr6:76311399-76311400	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
41	rs111525008	chr6:76311478-76311479	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	mRNA abundance
42	rs538401494	chr6:76311612-76311613	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
43	rs557010369	chr6:76311647-76311648	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
44	rs374087556	chr6:76311657-76311658	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
45	rs71561434	chr6:76311718-76311719	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	16 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs542892511	chr6:76311725-76311726	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
47	rs536224337	chr6:76311727-76311728	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
48	rs35178767	chr6:76311733-76311734	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
49	rs189124093	chr6:76311749-76311750	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
50	rs35708564	chr6:76311766-76311767	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD

Chromatin state (count:385 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76306800-76310400	Weak transcription	HepG2	liver
2	chr6:76308800-76310400	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:76309000-76310400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:76309000-76310400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:76309000-76310400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:76309000-76310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:76309000-76310400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:76309000-76310400	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:76309000-76310400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:76309000-76310400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:76309000-76310400	Weak transcription	GM12878-XiMat	blood
12	chr6:76309000-76310600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:76309000-76310600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:76309000-76310600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:76309000-76310600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:76309000-76310600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:76309000-76310800	Enhancers	Colon Smooth Muscle	Colon
18	chr6:76309000-76310800	Weak transcription	Right Atrium	heart
19	chr6:76309000-76311000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:76309000-76311000	Weak transcription	Aorta	Aorta
21	chr6:76309000-76311200	Weak transcription	Colonic Mucosa	Colon
22	chr6:76309000-76311200	Weak transcription	Ovary	ovary
23	chr6:76309000-76311400	Weak transcription	Spleen	Spleen
24	chr6:76309200-76310400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:76309200-76310400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:76309400-76310400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:76309400-76310400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:76309600-76310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:76309600-76310600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:76309600-76310600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:76309800-76310400	Enhancers	Fetal Lung	lung
32	chr6:76309800-76310600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:76309800-76310600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:76309800-76310600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:76309800-76310600	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:76309800-76310600	Enhancers	Dnd41	blood
37	chr6:76309800-76310800	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:76309800-76311000	Enhancers	Fetal Intestine Small	intestine
39	chr6:76309800-76311000	Enhancers	Fetal Stomach	stomach
40	chr6:76310000-76310600	Enhancers	Primary hematopoietic stem cells	blood
41	chr6:76310000-76310800	Enhancers	Fetal Intestine Large	intestine
42	chr6:76310200-76310400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:76310200-76310400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:76310200-76310400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:76310200-76310400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:76310200-76310400	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr6:76310200-76310400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:76310200-76310400	Enhancers	Fetal Brain Male	brain
49	chr6:76310200-76310400	Enhancers	Fetal Muscle Trunk	muscle
50	chr6:76310200-76310400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links