Variant report

Variant	esv3372194
Chromosome Location	chr10:725182-725606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:723887..725590-chr10:731403..733656,2	MCF-7	breast:
2	chr10:717115..720273-chr10:724564..727281,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183188968	chr10:725183-725184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs374416521	chr10:725185-725186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs367874257	chr10:725186-725187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs117117682	chr10:725198-725199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111429469	chr10:725207-725208	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113347638	chr10:725213-725214	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs116070273	chr10:725221-725222	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs116343006	chr10:725223-725224	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149499148	chr10:725243-725244	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs376882643	chr10:725248-725249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs369548358	chr10:725249-725250	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs564875880	chr10:725256-725257	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568089648	chr10:725262-725263	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574872205	chr10:725264-725265	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs186241339	chr10:725270-725271	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs375849312	chr10:725271-725272	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs112687155	chr10:725277-725278	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs552834590	chr10:725286-725287	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573100032	chr10:725294-725295	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529513609	chr10:725298-725299	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs558424195	chr10:725299-725300	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs575395913	chr10:725300-725301	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs184299149	chr10:725303-725304	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs75457008	chr10:725331-725332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544294925	chr10:725332-725333	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs74218239	chr10:725337-725338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs75918124	chr10:725353-725354	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs111761443	chr10:725371-725372	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs113855479	chr10:725376-725377	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs71494924	chr10:725401-725402	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs71494925	chr10:725408-725409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs71376848	chr10:725415-725416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs79218966	chr10:725416-725417	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs112072541	chr10:725430-725431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs71494927	chr10:725431-725432	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs145213747	chr10:725440-725441	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs528728991	chr10:725446-725447	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs144591990	chr10:725454-725455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs550416614	chr10:725461-725462	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs112050417	chr10:725478-725479	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs11253320	chr10:725485-725486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs11253321	chr10:725487-725488	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs71376849	chr10:725492-725493	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs191095064	chr10:725493-725494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs113308543	chr10:725508-725509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs554720975	chr10:725516-725517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs574468573	chr10:725559-725560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs182404493	chr10:725566-725567	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs369014623	chr10:725584-725585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs540258785	chr10:725590-725591	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:712200-725600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:712800-726000	Weak transcription	Fetal Stomach	stomach
3	chr10:713400-728800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:716200-725600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:716200-725800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:716400-725600	Weak transcription	Fetal Heart	heart
7	chr10:716400-726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:716400-729200	Weak transcription	Fetal Lung	lung
9	chr10:716400-732200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:716400-734200	Weak transcription	Fetal Kidney	kidney
11	chr10:718400-725600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:719600-725600	Weak transcription	Fetal Brain Male	brain
13	chr10:719800-725600	Weak transcription	Ovary	ovary
14	chr10:719800-725600	Weak transcription	Right Atrium	heart
15	chr10:719800-725800	Weak transcription	Adipose Nuclei	Adipose
16	chr10:719800-726000	Weak transcription	Brain Germinal Matrix	brain
17	chr10:722000-726000	Weak transcription	HSMM	muscle
18	chr10:722600-727200	Weak transcription	NHLF	lung
19	chr10:723400-727400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:723600-727600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:723800-727400	Weak transcription	Osteobl	bone
22	chr10:724000-725600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:724000-725600	Weak transcription	HSMMtube	muscle
24	chr10:724000-726400	Weak transcription	NHDF-Ad	bronchial
25	chr10:724000-727200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:724000-727800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:724200-725600	Weak transcription	Psoas Muscle	Psoas
28	chr10:724200-725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:724200-734000	Weak transcription	Colonic Mucosa	Colon
30	chr10:724400-725600	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:724400-725600	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:724400-726000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:724600-725400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:724600-725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:724600-725600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:724600-725600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:724600-725600	Weak transcription	Brain Anterior Caudate	brain
38	chr10:724600-725600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:724600-725600	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:724600-725600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:724600-725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:724600-725600	Weak transcription	Brain Substantia Nigra	brain
43	chr10:724600-725600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:724600-725600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:724600-725600	Weak transcription	Left Ventricle	heart
46	chr10:724600-725600	Weak transcription	Pancreas	Pancrea
47	chr10:724600-725600	Weak transcription	Right Ventricle	heart
48	chr10:724600-725600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:724600-725600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:724600-725600	Weak transcription	Spleen	Spleen

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