Variant report

Variant	esv3372529
Chromosome Location	chr12:40880885-40885083
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:40882994..40885029-chr12:40904694..40907438,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40879237-40885130	NONHSAT027728

Extended variants
information (count: 353 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:353 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554440317	chr12:40880890-40880891	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs76991689	chr12:40880892-40880893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs76037619	chr12:40880912-40880913	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs572601950	chr12:40880914-40880915	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs2933365	chr12:40880924-40880925	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs558034460	chr12:40880930-40880931	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs80222752	chr12:40880938-40880939	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs77199765	chr12:40880968-40880969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs79560006	chr12:40880980-40880981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs374166390	chr12:40880984-40880985	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs543880444	chr12:40880986-40880987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs562277997	chr12:40880989-40880990	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs529632704	chr12:40880991-40880992	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs77457259	chr12:40880996-40880997	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs74373302	chr12:40881007-40881008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs74847278	chr12:40881009-40881010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs78074711	chr12:40881017-40881018	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs77697327	chr12:40881029-40881030	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs201953353	chr12:40881033-40881034	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs78175342	chr12:40881072-40881073	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs78593021	chr12:40881086-40881087	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs55971362	chr12:40881099-40881100	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs181034623	chr12:40881114-40881115	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs199957192	chr12:40881127-40881128	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs375208541	chr12:40881128-40881129	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs527553829	chr12:40881145-40881146	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs71449766	chr12:40881166-40881167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs71449767	chr12:40881173-40881174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs71449768	chr12:40881183-40881184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs552463164	chr12:40881190-40881191	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs71449769	chr12:40881195-40881196	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs570633811	chr12:40881196-40881197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs71449770	chr12:40881199-40881200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs189426688	chr12:40881207-40881208	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs531566769	chr12:40881213-40881214	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs1826382	chr12:40881245-40881246	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs550286988	chr12:40881246-40881247	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs111619112	chr12:40881252-40881253	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs568615997	chr12:40881285-40881286	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs535953958	chr12:40881286-40881287	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs369568465	chr12:40881322-40881323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs371290009	chr12:40881325-40881326	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs553838405	chr12:40881349-40881350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs113266238	chr12:40881356-40881357	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs113419910	chr12:40881361-40881362	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs200868684	chr12:40881406-40881407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs566080508	chr12:40881413-40881414	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs199534443	chr12:40881416-40881417	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs200780002	chr12:40881424-40881425	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs572689380	chr12:40881428-40881429	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links