Variant report
| Variant | esv3372998 |
|---|---|
| Chromosome Location | chr9:43014956-43026554 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD20A3-8 | chr9:43017660-43021770 | ucscGeneNc_uc004acs_2 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs11265719 | chr9:43017886-43017887 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs199582883 | chr9:43018082-43018083 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs112042397 | chr9:43018216-43018217 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs111227375 | chr9:43019025-43019026 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs619990 | chr9:43019098-43019099 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs184054906 | chr9:43019251-43019252 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs2207468 | chr9:43019310-43019311 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs372257551 | chr9:43020395-43020396 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs9721855 | chr9:43020493-43020494 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs368046492 | chr9:43020548-43020549 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs371488850 | chr9:43020565-43020566 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs562059251 | chr9:43020582-43020583 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs200442645 | chr9:43020586-43020587 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs75796501 | chr9:43020609-43020610 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs200595515 | chr9:43020626-43020627 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs376591575 | chr9:43020627-43020628 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs76206008 | chr9:43020641-43020642 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs113542142 | chr9:43020812-43020813 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs568190940 | chr9:43020845-43020846 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs374674213 | chr9:43020921-43020922 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs1848653 | chr9:43021605-43021606 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:67)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Melanoma | 18172304 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Cancer | 20164919 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Autism | 22495311 | CNVD |
| Melanoma | 22183965 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Cancer | 16751803 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Sezary syndrome | 18413736 | CNVD |
| Breast cancer | 20409316 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| Schizophrenia | 21346763 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Lung adenocarcinoma | 17086460 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Breast cancer | 22522925 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
