Variant report

Variant	esv3373179
Chromosome Location	chr13:88825651-88829149
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561276397	chr13:88828437-88828438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs529283866	chr13:88828442-88828443	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs60533776	chr13:88828466-88828467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547783782	chr13:88828520-88828521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs112913636	chr13:88828534-88828535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs556284935	chr13:88828537-88828538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs566093568	chr13:88828555-88828556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs372291291	chr13:88828566-88828567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs147603248	chr13:88828567-88828568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs57902912	chr13:88828578-88828579	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs186869539	chr13:88828597-88828598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs190466246	chr13:88828660-88828661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs555928661	chr13:88828707-88828708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs567649527	chr13:88828754-88828755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs572653043	chr13:88828761-88828762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs552519667	chr13:88828822-88828823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs577229753	chr13:88828853-88828854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs373816464	chr13:88828866-88828867	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs544733441	chr13:88828870-88828871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541662947	chr13:88828887-88828888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs181307706	chr13:88828889-88828890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs575337019	chr13:88828910-88828911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs149098579	chr13:88828941-88828942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs11302087	chr13:88828981-88828982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs560948052	chr13:88828991-88828992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs890558	chr13:88828992-88828993	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88828400-88829000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links