Variant report

Variant	esv3373487
Chromosome Location	chr6:82337583-82341781
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:157 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561082553	chr6:82337604-82337605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs1145888	chr6:82337630-82337631	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs543147708	chr6:82337663-82337664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs559926101	chr6:82337680-82337681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377664898	chr6:82337683-82337684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189994353	chr6:82337692-82337693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs116114965	chr6:82337709-82337710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145359905	chr6:82337711-82337712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370874436	chr6:82337833-82337834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549478408	chr6:82337855-82337856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs551215007	chr6:82337883-82337884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567522531	chr6:82337901-82337902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149179516	chr6:82337922-82337923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs142463684	chr6:82337923-82337924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs183345765	chr6:82338071-82338072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs561355157	chr6:82338086-82338087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201645435	chr6:82338164-82338165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187177722	chr6:82338184-82338185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558293873	chr6:82338198-82338199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559961152	chr6:82338207-82338208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs191986251	chr6:82338223-82338224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs575144960	chr6:82338226-82338227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs151324339	chr6:82338333-82338334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554859944	chr6:82338334-82338335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574774078	chr6:82338355-82338356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540466027	chr6:82338370-82338371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs2759450	chr6:82338393-82338394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs573275880	chr6:82338463-82338464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs140563461	chr6:82338498-82338499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565143710	chr6:82338515-82338516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183509858	chr6:82338553-82338554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538686776	chr6:82338590-82338591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549748865	chr6:82338599-82338600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs561288841	chr6:82338650-82338651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544888979	chr6:82338687-82338688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188455919	chr6:82338740-82338741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75502073	chr6:82338750-82338751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77022165	chr6:82338751-82338752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79803772	chr6:82338752-82338753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76860442	chr6:82338755-82338756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546818997	chr6:82338821-82338822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12661374	chr6:82338865-82338866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567027376	chr6:82338922-82338923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs77242583	chr6:82338932-82338933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552211222	chr6:82338978-82338979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532228931	chr6:82339034-82339035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs537894999	chr6:82339055-82339056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs202003218	chr6:82339088-82339089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145627251	chr6:82339110-82339111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138355816	chr6:82339139-82339140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta
2	chr6:82340200-82341400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links