Variant report

Variant	esv3373658
Chromosome Location	chr5:2152347-2152822
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:2151523..2154328-chr5:2155802..2158524,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs72710663	chr5:2152348-2152349	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs575985009	chr5:2152349-2152350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs10063493	chr5:2152385-2152386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564062045	chr5:2152388-2152389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114793491	chr5:2152412-2152413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527655042	chr5:2152443-2152444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540277133	chr5:2152484-2152485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs561638897	chr5:2152493-2152494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529051680	chr5:2152512-2152513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190075842	chr5:2152513-2152514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550524828	chr5:2152525-2152526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568741596	chr5:2152534-2152535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7733590	chr5:2152535-2152536	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs558991031	chr5:2152548-2152549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs7710091	chr5:2152554-2152555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7733738	chr5:2152583-2152584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs7710212	chr5:2152589-2152590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181353694	chr5:2152603-2152604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570512806	chr5:2152618-2152619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112135023	chr5:2152624-2152625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534715808	chr5:2152640-2152641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7709108	chr5:2152650-2152651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs7710240	chr5:2152653-2152654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142335187	chr5:2152659-2152660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185337719	chr5:2152665-2152666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs535971361	chr5:2152675-2152676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540909476	chr5:2152685-2152686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368982594	chr5:2152688-2152689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs575949110	chr5:2152690-2152691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs190045196	chr5:2152706-2152707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs372615374	chr5:2152720-2152721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558492379	chr5:2152723-2152724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375640315	chr5:2152763-2152764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572758018	chr5:2152769-2152770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114495627	chr5:2152771-2152772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143715234	chr5:2152787-2152788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528961015	chr5:2152791-2152792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs180946985	chr5:2152800-2152801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370587660	chr5:2152804-2152805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562336926	chr5:2152810-2152811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16608533	CNVD
Cervical cancer	16585170	CNVD
Glioblastoma multiforme	22286061	CNVD
Lung cancer	17925434	CNVD
Ovarian cancer	20844748	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	21829676	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	19181860	CNVD
prenatal diagnosis	20453657	CNVD
Developmental delay	19490664	CNVD
Human papillomavirus	17975027	CNVD
Acute monocytic leukemia	16498392	CNVD
Gastric cancer	16891809	CNVD
Intracranial aneurysm	16715129	CNVD
Emphysema	19352772	CNVD
Chordoma	18071362	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung cancer	21911935	CNVD
Cri-du chat syndrome	21549014	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
abnormal development	18461090	CNVD
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Urothelial carcinoma	21177765	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	17550852	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Developmental delay	21147756	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	21364760	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2149800-2156400	Weak transcription	Esophagus	oesophagus
2	chr5:2150000-2156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:2150200-2160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:2151200-2157600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:2151600-2156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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