Variant report

Variant	esv3374264
Chromosome Location	chr7:19155652-19158400
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr7:19155559-19156240	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr7:19156793-19156902	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr7:19156545-19156550	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr7:19157965-19157974	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD2	chr7:19158087-19158099	H1-hESC	embryonic stem cell:	n/a	n/a
6	CHD2	chr7:19157108-19157365	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTBP2	chr7:19155933-19159128	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr7:19157940-19158090	HRPEpiC	eye:	n/a	n/a
9	CTCF	chr7:19158020-19158170	HVMF	connective:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
10	CTCF	chr7:19157960-19158110	HVMF	connective:	n/a	n/a
11	CTCF	chr7:19156320-19156470	HCPEpiC	choroid plexus:	n/a	n/a
12	CTCF	chr7:19155560-19155710	HCPEpiC	choroid plexus:	n/a	n/a
13	CTCF	chr7:19157946-19158260	IMR90	lung:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
14	CTCF	chr7:19156720-19156870	AG04449	skin:	n/a	n/a
15	CTCF	chr7:19158140-19158290	BE2_C	brain:	n/a	n/a
16	CTCF	chr7:19155960-19156110	HMEC	breast:	n/a	n/a
17	CTCF	chr7:19157980-19158130	HCPEpiC	choroid plexus:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
18	CTCF	chr7:19158020-19158170	HRPEpiC	eye:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
19	CTCF	chr7:19158040-19158190	HMEC	breast:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
20	CTCF	chr7:19158020-19158170	A549	lung:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
21	CTCF	chr7:19157520-19157670	HA-sp	spinal cord:	n/a	chr7:19157529-19157542
22	CTCF	chr7:19157960-19158110	HA-sp	spinal cord:	n/a	n/a
23	CTCF	chr7:19156040-19156190	SK-N-SH_RA	brain:	n/a	n/a
24	CTCF	chr7:19158100-19158250	HRE	kidney:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
25	CTCF	chr7:19156861-19156908	MCF-7	breast:	n/a	n/a
26	CTCF	chr7:19158020-19158170	HEK293	kidney:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
27	CTCF	chr7:19158060-19158210	HCFaa	heart:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
28	CTCF	chr7:19158040-19158190	SK-N-SH_RA	brain:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
29	CTCF	chr7:19155520-19155670	HBMEC	blood vessel:	n/a	n/a
30	CTCF	chr7:19158036-19158185	MCF-7	breast:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
31	CTCF	chr7:19158060-19158210	SK-N-SH_RA	brain:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
32	CTCF	chr7:19157960-19158230	HFF-Myc	foreskin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
33	CTCF	chr7:19157520-19157670	AG09319	gingival:	n/a	chr7:19157529-19157542
34	CTCF	chr7:19158060-19158210	HPAF	blood vessel:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
35	CTCF	chr7:19157989-19158227	Fibrobl	skin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
36	CTCF	chr7:19158040-19158190	HCT-116	colon:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
37	CTCF	chr7:19158040-19158190	AG04449	skin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
38	CTCF	chr7:19157993-19158231	ProgFib	skin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
39	CTCF	chr7:19158000-19158150	AG09309	skin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
40	CTCF	chr7:19158020-19158170	AG04450	lung:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
41	CTCF	chr7:19158060-19158210	AG04450	lung:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
42	CTCF	chr7:19158038-19158139	GM10248	blood:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
43	CTCF	chr7:19158038-19158197	MCF-7	breast:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
44	CTCF	chr7:19158000-19158150	HCM	heart:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
45	CTCF	chr7:19157568-19157648	Gliobla	brain:	n/a	n/a
46	CTCF	chr7:19158160-19158310	NHDF-neo	bronchial:	n/a	n/a
47	CTCF	chr7:19158200-19158350	AG04450	lung:	n/a	n/a
48	CTCF	chr7:19158046-19158160	NHEK	skin:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
49	CTCF	chr7:19158060-19158210	HMF	breast:	n/a	chr7:19158101-19158119 chr7:19158104-19158117
50	CTCF	chr7:19157980-19158130	HEEpiC	esophagus:	n/a	chr7:19158101-19158119 chr7:19158104-19158117

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:19157650-19157700	HIPEpiC	eye:	n/a
2	chr7:19157650-19157700	HPAEpiC	pulmonary alveolar:	n/a
3	chr7:19158134-19158184	GM12892	blood:	n/a
4	chr7:19157650-19157700	HIPEpiC	eye:	n/a
5	chr7:19157650-19157700	HPAEpiC	pulmonary alveolar:	n/a
6	chr7:19158134-19158184	GM12892	blood:	n/a
7	chr7:19158041-19158091	HUVEC	blood vessel:	n/a
8	chr7:19157339-19157389	SK-N-SH_RA	brain:	n/a
9	chr7:19157263-19157313	HRPEpiC	eye:	n/a
10	chr7:19157710-19157760	SK-N-MC	brain:	n/a
11	chr7:19157339-19157389	NHBE	bronchial:	n/a
12	chr7:19155785-19155835	NHBE	bronchial:	n/a
13	chr7:19157193-19157243	AG09319	gingival:	n/a
14	chr7:19156550-19156600	Hela-S3	cervix:	n/a
15	chr7:19158378-19158428	NHBE	bronchial:	n/a
16	chr7:19158041-19158091	HNPCEpiC	eye:	n/a
17	chr7:19156621-19156671	SK-N-SH_RA	brain:	n/a
18	chr7:19158349-19158399	CMK	blood:	n/a
19	chr7:19156621-19156671	BJ	skin:	n/a
20	chr7:19157420-19157470	NHDF-neo	bronchial:	n/a
21	chr7:19157710-19157760	HMEC	breast:	n/a
22	chr7:19157710-19157760	HCM	heart:	n/a
23	chr7:19157739-19157789	SK-N-SH_RA	brain:	n/a
24	chr7:19157193-19157243	NT2-D1	testis:	n/a
25	chr7:19155785-19155835	BJ	skin:	n/a
26	chr7:19156902-19156952	NT2-D1	testis:	n/a
27	chr7:19157813-19157863	HCM	heart:	n/a
28	chr7:19157650-19157700	GM12891	blood:	n/a
29	chr7:19156902-19156952	BJ	skin:	n/a
30	chr7:19158349-19158399	GM12891	blood:	n/a
31	chr7:19157650-19157700	A549	lung:	n/a
32	chr7:19156902-19156952	AG04449	skin:	fetal
33	chr7:19158134-19158184	HEK293	kidney:	embryo
34	chr7:19157339-19157389	HUVEC	blood vessel:	n/a
35	chr7:19158349-19158399	SK-N-SH_RA	brain:	n/a
36	chr7:19157339-19157389	NT2-D1	testis:	n/a
37	chr7:19157339-19157389	LNCaP	prostate:	n/a
38	chr7:19158123-19158173	HCM	heart:	n/a
39	chr7:19156550-19156600	GM12878	blood:	n/a
40	chr7:19158210-19158260	AG10803	skin:	n/a
41	chr7:19157263-19157313	MCF10A-Er-Src	breast:	n/a
42	chr7:19157263-19157313	IMR90	lung:	fetal
43	chr7:19158210-19158260	AoSMC	blood vessel:	n/a
44	chr7:19158378-19158428	MCF-7	breast:	n/a
45	chr7:19158210-19158260	GM12878	blood:	n/a
46	chr7:19157938-19157988	HepG2	liver:	n/a
47	chr7:19158349-19158399	ovcar-3	ovarian:	n/a
48	chr7:19156550-19156600	ECC-1	luminal epithelium:	n/a
49	chr7:19157650-19157700	HUVEC	blood vessel:	n/a
50	chr7:19157420-19157470	GM12892	blood:	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-9	chr7:19156379-19156637	NONHSAT119382
2	lnc-HDAC9-9	chr7:19156130-19156172	NONHSAT119382

Variant related genes	Relation type
TWIST1	TF binding region
ENSG00000236536	TF binding region
TWIST1	CpG island
ENSG00000236536	CpG island

Extended variants
information (count: 150 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536833438	chr7:19155654-19155655	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs554912927	chr7:19155715-19155716	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs576068002	chr7:19155742-19155743	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs527926420	chr7:19155758-19155759	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs536778035	chr7:19155768-19155769	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs575838997	chr7:19155769-19155770	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs138390369	chr7:19155770-19155771	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs55734353	chr7:19155780-19155781	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs539560603	chr7:19155781-19155782	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs149963436	chr7:19155782-19155783	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs558633197	chr7:19155785-19155786	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
12	rs576400040	chr7:19155833-19155834	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
13	rs540624266	chr7:19155863-19155864	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs559181197	chr7:19155912-19155913	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs574432712	chr7:19155919-19155920	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs532302907	chr7:19155984-19155985	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs542003035	chr7:19155985-19155986	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs60767072	chr7:19155988-19155989	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs147172672	chr7:19156014-19156015	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs549979233	chr7:19156040-19156041	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs565381752	chr7:19156044-19156045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs183006608	chr7:19156140-19156141	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs4647960	chr7:19156149-19156150	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs547854422	chr7:19156191-19156192	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs188412313	chr7:19156192-19156193	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs536574277	chr7:19156193-19156194	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs377293398	chr7:19156197-19156198	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs368929258	chr7:19156203-19156204	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs548746046	chr7:19156221-19156222	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs372109750	chr7:19156304-19156305	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs537671443	chr7:19156311-19156312	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs558318692	chr7:19156317-19156318	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs576538800	chr7:19156342-19156343	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs375138242	chr7:19156346-19156347	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs200097632	chr7:19156372-19156373	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs200369729	chr7:19156374-19156375	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs201480496	chr7:19156378-19156379	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs121909191	chr7:19156382-19156383	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs121909190	chr7:19156389-19156390	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs115322362	chr7:19156399-19156400	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs104894058	chr7:19156404-19156405	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs374993339	chr7:19156407-19156408	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs200489094	chr7:19156408-19156409	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs201837657	chr7:19156414-19156415	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs199783793	chr7:19156426-19156427	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs200605809	chr7:19156428-19156429	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs202043517	chr7:19156435-19156436	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs199842455	chr7:19156436-19156437	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs200793804	chr7:19156437-19156438	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs76446751	chr7:19156443-19156444	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Cancer	21183584	CNVD
Autism	20808228	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:408 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19150800-19157200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:19151800-19158800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:19153200-19155800	Active TSS	Adipose Nuclei	Adipose
4	chr7:19153600-19158600	Active TSS	Right Atrium	heart
5	chr7:19153800-19158000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:19154000-19156000	Active TSS	Placenta	Placenta
7	chr7:19154000-19157800	Active TSS	NHLF	lung
8	chr7:19154000-19158000	Active TSS	Muscle Satellite Cultured Cells	--
9	chr7:19154000-19158600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:19154000-19159000	Active TSS	HSMM	muscle
11	chr7:19154200-19158200	Active TSS	Aorta	Aorta
12	chr7:19154600-19156000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr7:19154800-19157800	Active TSS	NH-A	brain
14	chr7:19154800-19158200	Active TSS	HSMMtube	muscle
15	chr7:19155000-19155800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:19155000-19157400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:19155000-19158400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr7:19155000-19158600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:19155200-19156000	Active TSS	HMEC	breast
20	chr7:19155200-19158400	Active TSS	Osteobl	bone
21	chr7:19155200-19158600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:19155200-19159800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr7:19155400-19155800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:19155400-19155800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
25	chr7:19155400-19155800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:19155400-19155800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
27	chr7:19155400-19156000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:19155400-19156000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
29	chr7:19155400-19156000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
30	chr7:19155400-19156000	Active TSS	Right Ventricle	heart
31	chr7:19155400-19156200	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr7:19155400-19156600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
33	chr7:19155400-19156600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr7:19155400-19156600	Bivalent/Poised TSS	A549	lung
35	chr7:19155400-19157800	Active TSS	Ovary	ovary
36	chr7:19155400-19158000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr7:19155400-19158000	Bivalent/Poised TSS	Fetal Stomach	stomach
38	chr7:19155400-19158200	Bivalent/Poised TSS	Fetal Kidney	kidney
39	chr7:19155400-19158400	Bivalent/Poised TSS	NHEK	skin
40	chr7:19155600-19155800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:19155600-19155800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
42	chr7:19155600-19155800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:19155600-19155800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:19155600-19155800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:19155600-19155800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
46	chr7:19155600-19155800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
47	chr7:19155600-19155800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr7:19155600-19156000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:19155600-19156000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
50	chr7:19155600-19156000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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