Variant report

Variant	esv3375324
Chromosome Location	chr10:28472221-28475144
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28471062..28472582-chr18:33000309..33001817,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140023527	chr10:28472221-28472222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532129998	chr10:28472261-28472262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs547297219	chr10:28472325-28472326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs565824758	chr10:28472342-28472343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536693737	chr10:28472357-28472358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs7894070	chr10:28472412-28472413	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs184995042	chr10:28472458-28472459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537558109	chr10:28472469-28472470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559065110	chr10:28472511-28472512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111937157	chr10:28472534-28472535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs577516203	chr10:28472560-28472561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs187915215	chr10:28472591-28472592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553676358	chr10:28472631-28472632	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs575010422	chr10:28472632-28472633	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143826735	chr10:28472650-28472651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10826414	chr10:28472662-28472663	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs575605414	chr10:28472673-28472674	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs543119913	chr10:28472800-28472801	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs565848184	chr10:28472849-28472850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148159260	chr10:28472894-28472895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141364604	chr10:28472926-28472927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145100775	chr10:28473046-28473047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192842696	chr10:28473058-28473059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs183688403	chr10:28473095-28473096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs548428896	chr10:28473108-28473109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs12359230	chr10:28473129-28473130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200131488	chr10:28473131-28473132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201225594	chr10:28473133-28473134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201990823	chr10:28473135-28473136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs67387952	chr10:28473136-28473137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs386371029	chr10:28473139-28473140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs55897856	chr10:28473140-28473141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs537395736	chr10:28473149-28473150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555087581	chr10:28473174-28473175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552713332	chr10:28473270-28473271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs137961112	chr10:28473322-28473323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35402471	chr10:28473327-28473328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187957927	chr10:28473350-28473351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10826415	chr10:28473357-28473358	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs192526095	chr10:28473395-28473396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs184660723	chr10:28473402-28473403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs142454969	chr10:28473422-28473423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575644109	chr10:28473497-28473498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs543003184	chr10:28473498-28473499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564682586	chr10:28473499-28473500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs114564320	chr10:28473538-28473539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192441682	chr10:28473613-28473614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs559298789	chr10:28473671-28473672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs7901941	chr10:28473692-28473693	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs150524127	chr10:28473695-28473696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28467600-28472600	Weak transcription	Fetal Stomach	stomach
3	chr10:28467600-28485400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:28467600-28491800	Weak transcription	Psoas Muscle	Psoas
5	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
6	chr10:28467800-28495200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28468200-28484600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:28469800-28491000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:28470000-28485600	Weak transcription	Primary T cells from cord blood	blood
10	chr10:28471000-28476200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:28471600-28474400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:28471600-28475600	Weak transcription	Fetal Heart	heart
13	chr10:28472600-28472800	Enhancers	Fetal Stomach	stomach
14	chr10:28474600-28474800	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links