Variant report

Variant	esv3375393
Chromosome Location	chr10:91880933-92243227
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2164)
CpG islands
(count:427)
Chromatin interactive
region (count:47)
LncRNA
region (count:37)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2164 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr10:92079033-92079660	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF2	chr10:92180364-92180842	GM12878	blood:	n/a	n/a
3	ATF2	chr10:91890317-91890862	GM12878	blood:	n/a	n/a
4	ATF2	chr10:91890093-91890911	GM12878	blood:	n/a	n/a
5	ATF2	chr10:91927258-91927862	GM12878	blood:	n/a	n/a
6	ATF2	chr10:91927400-91927804	GM12878	blood:	n/a	n/a
7	ATF2	chr10:92079277-92079707	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr10:92079146-92079685	HCT-116	colon:	n/a	n/a
9	ATF3	chr10:91982032-91982513	HCT-116	colon:	n/a	n/a
10	ATF3	chr10:91939363-91939912	HCT-116	colon:	n/a	n/a
11	ATF3	chr10:92079201-92079608	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF3	chr10:91986749-91987509	HCT-116	colon:	n/a	n/a
13	ATF3	chr10:92073505-92074222	HCT-116	colon:	n/a	n/a
14	ATF3	chr10:92079291-92079622	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr10:91986779-91987513	HCT-116	colon:	n/a	n/a
16	BACH1	chr10:92079099-92079716	H1-hESC	embryonic stem cell:	n/a	chr10:92079432-92079446
17	BACH1	chr10:92184912-92184933	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr10:92076070-92076080	H1-hESC	embryonic stem cell:	n/a	n/a
19	BATF	chr10:92180437-92180697	GM12878	blood:	n/a	n/a
20	BATF	chr10:92180389-92180682	GM12878	blood:	n/a	n/a
21	BATF	chr10:92079259-92079651	GM12878	blood:	n/a	chr10:92079435-92079446 chr10:92079436-92079446
22	BATF	chr10:91927387-91927750	GM12878	blood:	n/a	n/a
23	BATF	chr10:91959364-91959521	GM12878	blood:	n/a	n/a
24	BATF	chr10:92079240-92079608	GM12878	blood:	n/a	chr10:92079435-92079446 chr10:92079436-92079446
25	BATF	chr10:91986969-91987320	GM12878	blood:	n/a	chr10:91987115-91987126 chr10:91987112-91987122 chr10:91987116-91987126
26	BATF	chr10:91927485-91927777	GM12878	blood:	n/a	n/a
27	BATF	chr10:91890152-91890374	GM12878	blood:	n/a	n/a
28	BATF	chr10:91890157-91890885	GM12878	blood:	n/a	chr10:91890837-91890847
29	BCL11A	chr10:92079360-92079636	H1-hESC	embryonic stem cell:	n/a	chr10:92079445-92079454 chr10:92079435-92079444 chr10:92079434-92079443
30	BCL11A	chr10:91890115-91890841	GM12878	blood:	n/a	chr10:91890270-91890279
31	BCL11A	chr10:92079310-92079648	H1-hESC	embryonic stem cell:	n/a	chr10:92079445-92079454 chr10:92079435-92079444 chr10:92079434-92079443
32	BCL11A	chr10:92079217-92079614	GM12878	blood:	n/a	chr10:92079445-92079454 chr10:92079435-92079444 chr10:92079434-92079443
33	BCL11A	chr10:92180396-92180743	GM12878	blood:	n/a	n/a
34	BCL11A	chr10:92180394-92180720	GM12878	blood:	n/a	n/a
35	BCL11A	chr10:92123906-92124192	H1-hESC	embryonic stem cell:	n/a	n/a
36	BCL11A	chr10:91927479-91927794	GM12878	blood:	n/a	n/a
37	BCL3	chr10:92079236-92079578	GM12878	blood:	n/a	chr10:92079445-92079454 chr10:92079435-92079444 chr10:92079434-92079443
38	BCL3	chr10:91927465-91927749	GM12878	blood:	n/a	n/a
39	BCL3	chr10:92140213-92140457	GM12878	blood:	n/a	n/a
40	BCLAF1	chr10:91896461-91896791	GM12878	blood:	n/a	n/a
41	BHLHE40	chr10:91927540-91927714	GM12878	blood:	n/a	n/a
42	BHLHE40	chr10:91890242-91890882	GM12878	blood:	n/a	n/a
43	BHLHE40	chr10:92197207-92197414	GM12878	blood:	n/a	n/a
44	BHLHE40	chr10:92112120-92112285	GM12878	blood:	n/a	n/a
45	BRCA1	chr10:91908318-91908467	H1-hESC	embryonic stem cell:	n/a	n/a
46	BRCA1	chr10:92066345-92066351	GM12878	blood:	n/a	n/a
47	CBX3	chr10:92210988-92211708	HCT-116	colon:	n/a	n/a
48	CBX3	chr10:91896309-91897039	HCT-116	colon:	n/a	n/a
49	CBX3	chr10:91986546-91987624	HCT-116	colon:	n/a	n/a
50	CBX3	chr10:91939280-91939970	HCT-116	colon:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:92063013-92063063	AG09319	gingival:	n/a
2	chr10:92213236-92213286	AG04450	lung:	fetal
3	chr10:92213389-92213439	AG09309	skin:	n/a
4	chr10:92213389-92213439	NB4	blood:	n/a
5	chr10:92079600-92079650	ProgFib	skin:	n/a
6	chr10:91919031-91919081	SAEC	small airway:	n/a
7	chr10:92123669-92123719	HEK293	kidney:	embryo
8	chr10:91919031-91919081	HRPEpiC	eye:	n/a
9	chr10:91919031-91919081	HRE	kidney:	n/a
10	chr10:92123669-92123719	Caco-2	colon:	n/a
11	chr10:92063013-92063063	HAEpiC	amniotic membrane:	n/a
12	chr10:92213236-92213286	Jurkat	blood:	n/a
13	chr10:92213236-92213286	HEEpiC	esophagus:	n/a
14	chr10:92079600-92079650	SK-N-SH	brain:	n/a
15	chr10:92153495-92153545	HCT-116	colon:	n/a
16	chr10:91919031-91919081	NB4	blood:	n/a
17	chr10:92063013-92063063	Hepatocyte	liver:	n/a
18	chr10:92213389-92213439	AG10803	skin:	n/a
19	chr10:92063013-92063063	AoSMC	blood vessel:	n/a
20	chr10:92079600-92079650	HCM	heart:	n/a
21	chr10:92153495-92153545	GM06990	blood:	n/a
22	chr10:92213389-92213439	AG04450	lung:	fetal
23	chr10:92213236-92213286	MCF-7	breast:	n/a
24	chr10:92079600-92079650	BJ	skin:	n/a
25	chr10:92213236-92213286	ovcar-3	ovarian:	n/a
26	chr10:91919031-91919081	HEK293	kidney:	embryo
27	chr10:92079600-92079650	SK-N-SH_RA	brain:	n/a
28	chr10:92213389-92213439	HCM	heart:	n/a
29	chr10:92063013-92063063	BJ	skin:	n/a
30	chr10:92153495-92153545	CMK	blood:	n/a
31	chr10:92063013-92063063	HEK293	kidney:	embryo
32	chr10:91919031-91919081	ovcar-3	ovarian:	n/a
33	chr10:92213389-92213439	BJ	skin:	n/a
34	chr10:92079600-92079650	PFSK-1	brain:	n/a
35	chr10:92123669-92123719	AG09309	skin:	n/a
36	chr10:92213389-92213439	NT2-D1	testis:	n/a
37	chr10:92153495-92153545	SKMC	muscle:	n/a
38	chr10:92213389-92213439	LNCaP	prostate:	n/a
39	chr10:92213236-92213286	NB4	blood:	n/a
40	chr10:92213236-92213286	ECC-1	luminal epithelium:	n/a
41	chr10:92153495-92153545	HEK293	kidney:	embryo
42	chr10:92123669-92123719	Jurkat	blood:	n/a
43	chr10:92213389-92213439	T-47D	breast:	n/a
44	chr10:91919031-91919081	HCM	heart:	n/a
45	chr10:91919031-91919081	HUVEC	blood vessel:	n/a
46	chr10:92123669-92123719	HAEpiC	amniotic membrane:	n/a
47	chr10:92213236-92213286	Hela-S3	cervix:	n/a
48	chr10:91919031-91919081	BE2_C	brain:	n/a
49	chr10:91919031-91919081	H1-hESC	embryonic stem cell:	embryo
50	chr10:92079600-92079650	NH-A	brain:	n/a

(count:47 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91886442..91889438-chr10:91891894..91894771,2	MCF-7	breast:
2	chr10:91938353..91941143-chr10:91951885..91953423,2	MCF-7	breast:
3	chr10:92196966..92197656-chr10:92339492..92340259,2	MCF-7	breast:
4	chr10:92197334..92197860-chr10:92338992..92339734,2	MCF-7	breast:
5	chr10:91908451..91909024-chr10:92048226..92048868,2	MCF-7	breast:
6	chr10:91982612..91984620-chr10:91985971..91988082,2	MCF-7	breast:
7	chr10:91931353..91933621-chr10:91948075..91950614,2	K562	blood:
8	chr10:91585659..91588157-chr10:92199771..92201481,2	MCF-7	breast:
9	chr10:91905536..91908500-chr10:91908685..91910985,2	K562	blood:
10	chr10:91905536..91908500-chr10:91908685..91910985,2	K562	blood:
11	chr10:91967172..91968882-chr10:91972156..91974992,2	MCF-7	breast:
12	chr10:91968000..91970356-chr10:91975660..91978114,2	MCF-7	breast:
13	chr10:92051318..92054074-chr10:92099394..92101764,2	MCF-7	breast:
14	chr10:92051318..92054074-chr10:92099394..92101764,2	MCF-7	breast:
15	chr10:91982612..91984620-chr10:91985971..91988082,2	MCF-7	breast:
16	chr10:92177056..92178628-chr10:92179037..92181377,2	MCF-7	breast:
17	chr10:91964674..91966722-chr10:91976037..91978433,2	MCF-7	breast:
18	chr10:91967172..91968882-chr10:91972156..91974992,2	MCF-7	breast:
19	chr10:92177056..92178628-chr10:92179037..92181377,2	MCF-7	breast:
20	chr10:92184835..92186685-chr10:92187388..92189622,2	MCF-7	breast:
21	chr10:91931353..91933621-chr10:91948075..91950614,2	K562	blood:
22	chr10:91907918..91908914-chr10:92477743..92478315,2	MCF-7	breast:
23	chr10:91900968..91904082-chr10:91905876..91909843,4	MCF-7	breast:
24	chr10:91553240..91554032-chr10:91898333..91899226,2	MCF-7	breast:
25	chr10:92048060..92049321-chr10:92352261..92353257,6	MCF-7	breast:
26	chr10:92047878..92048766-chr10:92339403..92340022,2	MCF-7	breast:
27	chr10:92064760..92066679-chr10:92166883..92168806,2	MCF-7	breast:
28	chr10:91908451..91909024-chr10:92048226..92048868,2	MCF-7	breast:
29	chr10:91886442..91889438-chr10:91891894..91894771,2	MCF-7	breast:
30	chr10:91908029..91908801-chr10:92352406..92353300,3	MCF-7	breast:
31	chr10:91899658..91901656-chr3:161118536..161120894,2	MCF-7	breast:
32	chr10:91964674..91966722-chr10:91976037..91978433,2	MCF-7	breast:
33	chr10:92184835..92186685-chr10:92187388..92189622,2	MCF-7	breast:
34	chr10:91553149..91554039-chr10:91898323..91899074,3	MCF-7	breast:
35	chr10:92079088..92081474-chr10:92085377..92088671,3	MCF-7	breast:
36	chr10:92047473..92050346-chr10:92165247..92168101,3	MCF-7	breast:
37	chr10:91908033..91909093-chr10:92411955..92412824,3	MCF-7	breast:
38	chr10:91908037..91908636-chr10:92339006..92340002,2	MCF-7	breast:
39	chr10:91900968..91904082-chr10:91905876..91909843,4	MCF-7	breast:
40	chr10:92079088..92081474-chr10:92085377..92088671,3	MCF-7	breast:
41	chr10:92047856..92048792-chr10:92412267..92413265,3	MCF-7	breast:
42	chr10:91679148..91682138-chr10:91965404..91969772,3	MCF-7	breast:
43	chr10:91938353..91941143-chr10:91951885..91953423,2	MCF-7	breast:
44	chr10:92047473..92050346-chr10:92165247..92168101,3	MCF-7	breast:
45	chr10:92046589..92049031-chr10:92410934..92413664,2	MCF-7	breast:
46	chr10:92064760..92066679-chr10:92166883..92168806,2	MCF-7	breast:
47	chr10:91968000..91970356-chr10:91975660..91978114,2	MCF-7	breast:

(count:37 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-10	chr10:92235756-92235809	ucscGeneNc_uc001kgy_2
2	lnc-RPP30-10	chr10:92210509-92211238	NONHSAT015588
3	lnc-RPP30-6	chr10:92213926-92214072	XLOC_008556
4	lnc-RPP30-9	chr10:92217602-92217689	NONHSAT015591
5	lnc-RPP30-10	chr10:92204435-92204560	NONHSAT015589
6	lnc-RPP30-9	chr10:92215653-92215725	NONHSAT015591
7	lnc-HTR7-1	chr10:92166207-92166352	XLOC_008901
8	lnc-RPP30-5	chr10:92225673-92225745	XLOC_008557
9	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015589
10	lnc-PANK1-8	chr10:91923408-91923717	NONHSAT015582
11	lnc-RPP30-10	chr10:92204435-92204560	NONHSAT015590
12	lnc-RPP30-10	chr10:92204417-92204560	NONHSAT015588
13	lnc-RPP30-10	chr10:92203907-92204052	NONHSAT015587
14	lnc-RPP30-9	chr10:92212454-92213123	NONHSAT015591
15	lnc-KIF20B-5	chr10:91965517-91965545	XLOC_008555
16	lnc-RPP30-6	chr10:92213927-92214072	ENSG00000224750
17	lnc-RPP30-5	chr10:92222474-92223143	XLOC_008557
18	lnc-RPP30-6	chr10:92220529-92221258	XLOC_008556
19	lnc-HTR7-1	chr10:92162711-92162796	XLOC_008901
20	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015590
21	lnc-RPP30-5	chr10:92227622-92227709	XLOC_008557
22	lnc-KIF20B-8	chr10:91924526-91924552	NONHSAT015584
23	lnc-HTR7-1	chr10:92163745-92163811	XLOC_008901
24	lnc-HTR7-2	chr10:92153725-92153791	NONHSAT015585
25	lnc-HTR7-2	chr10:92152258-92152545	NONHSAT015585
26	lnc-HTR7-2	chr10:92152691-92152776	NONHSAT015585
27	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015587
28	lnc-HTR7-1	chr10:92211437-92211590	XLOC_008901
29	lnc-HTR7-2	chr10:92156187-92156332	NONHSAT015585
30	lnc-RPP30-10	chr10:92203906-92204052	ucscGeneNc_uc001kgy_2
31	lnc-RPP30-6	chr10:92214455-92214580	XLOC_008556
32	lnc-HTR7-2	chr10:92201417-92201570	NONHSAT015585
33	lnc-RPP30-6	chr10:92214437-92214580	XLOC_008556
34	lnc-RPP30-6	chr10:92214455-92214580	XLOC_008556
35	lnc-KIF20B-8	chr10:91939472-91939926	NONHSAT015584
36	lnc-HTR7-1	chr10:92162278-92162565	XLOC_008901
37	lnc-KIF20B-5	chr10:91923670-91923893	XLOC_008555

No data

Variant related genes	Relation type
ENSG00000238291	TF binding region
RN7SKP143	TF binding region
ENSG00000224750	TF binding region
ENSG00000238291	CpG island
RN7SKP143	CpG island
ENSG00000224750	CpG island
BCL11B	miRNA target sites
MLL2	miRNA target sites

Extended variants
information (count: 12587 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:12587 , 50 per page) page: 1 2 3 4 5 6 7 ... 252

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141656130	chr10:91880989-91880990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530144987	chr10:91881013-91881014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs549225761	chr10:91881038-91881039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs117130849	chr10:91881064-91881065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs570090811	chr10:91881065-91881066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532634312	chr10:91881086-91881087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189653786	chr10:91881116-91881117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs115456799	chr10:91881138-91881139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541938287	chr10:91881180-91881181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs554811588	chr10:91881189-91881190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562147733	chr10:91881190-91881191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568395439	chr10:91881197-91881198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535881110	chr10:91881227-91881228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184084432	chr10:91881241-91881242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571248728	chr10:91881252-91881253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538541465	chr10:91881269-91881270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs538681818	chr10:91881270-91881271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs567488557	chr10:91881300-91881301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs150511251	chr10:91881369-91881370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537914402	chr10:91881381-91881382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs572172179	chr10:91881419-91881420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541359155	chr10:91881421-91881422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs527701234	chr10:91881447-91881448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561201452	chr10:91881448-91881449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574774424	chr10:91881476-91881477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189015223	chr10:91881488-91881489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563653182	chr10:91881507-91881508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs532506855	chr10:91881529-91881530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs547358731	chr10:91881553-91881554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192919589	chr10:91881576-91881577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11816423	chr10:91881662-91881663	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs183470406	chr10:91881682-91881683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111966052	chr10:91881728-91881729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565594031	chr10:91881756-91881757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs568458749	chr10:91881806-91881807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187246007	chr10:91881818-91881819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549514718	chr10:91881831-91881832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569594824	chr10:91881907-91881908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs538372207	chr10:91881919-91881920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs191656321	chr10:91881938-91881939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572155317	chr10:91881975-91881976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184094545	chr10:91882053-91882054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532661213	chr10:91882075-91882076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554800898	chr10:91882151-91882152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs188407169	chr10:91882172-91882173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs574786747	chr10:91882176-91882177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543658948	chr10:91882211-91882212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs192713698	chr10:91882239-91882240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185724764	chr10:91882240-91882241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556790459	chr10:91882292-91882293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1187 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91872400-91884400	Weak transcription	Aorta	Aorta
2	chr10:91883600-91885200	Enhancers	Osteobl	bone
3	chr10:91883800-91884000	Enhancers	NHLF	lung
4	chr10:91883800-91885200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:91884000-91885000	Weak transcription	NHLF	lung
6	chr10:91884200-91886600	Enhancers	Brain Germinal Matrix	brain
7	chr10:91884400-91884600	Enhancers	Aorta	Aorta
8	chr10:91884400-91885400	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:91884400-91885600	Enhancers	Brain Hippocampus Middle	brain
10	chr10:91884400-91886400	Enhancers	Fetal Muscle Leg	muscle
11	chr10:91884600-91885200	Weak transcription	Aorta	Aorta
12	chr10:91884600-91886000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:91884600-91886600	Enhancers	Fetal Stomach	stomach
14	chr10:91884600-91886600	Enhancers	NH-A	brain
15	chr10:91884800-91886200	Enhancers	Fetal Brain Female	brain
16	chr10:91884800-91886400	Enhancers	Brain Angular Gyrus	brain
17	chr10:91884800-91886400	Enhancers	Brain Anterior Caudate	brain
18	chr10:91885000-91886000	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:91885000-91886200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:91885000-91886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:91885000-91886400	Enhancers	Fetal Lung	lung
22	chr10:91885000-91886400	Enhancers	NHLF	lung
23	chr10:91885000-91887200	Enhancers	Brain Substantia Nigra	brain
24	chr10:91885200-91885400	Enhancers	Psoas Muscle	Psoas
25	chr10:91885200-91885600	Flanking Active TSS	Osteobl	bone
26	chr10:91885200-91885800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:91885200-91886000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:91885200-91886000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr10:91885200-91886000	Enhancers	Fetal Brain Male	brain
30	chr10:91885200-91886000	Enhancers	HSMM	muscle
31	chr10:91885200-91886200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:91885200-91886200	Enhancers	Aorta	Aorta
33	chr10:91885200-91886200	Enhancers	HMEC	breast
34	chr10:91885200-91886200	Enhancers	HSMMtube	muscle
35	chr10:91885200-91886400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:91885400-91885800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:91885400-91886000	Enhancers	Right Atrium	heart
38	chr10:91885400-91886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:91885400-91891400	Weak transcription	Psoas Muscle	Psoas
40	chr10:91885600-91886000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr10:91885600-91886200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr10:91885600-91886600	Enhancers	Osteobl	bone
43	chr10:91885800-91886200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:91886000-91886200	Enhancers	Brain Hippocampus Middle	brain
45	chr10:91886200-91889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:91889200-91890000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:91889600-91890200	Enhancers	GM12878-XiMat	blood
48	chr10:91890000-91894400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:91890200-91890800	Flanking Active TSS	GM12878-XiMat	blood
50	chr10:91890800-91892000	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links