Variant report

Variant	esv3375759
Chromosome Location	chr3:93507123-93515343
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 757 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:757 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571967749	chr3:93507125-93507126	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs77417125	chr3:93507137-93507138	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs557836073	chr3:93507146-93507147	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs182809152	chr3:93507163-93507164	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs374789588	chr3:93507169-93507170	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs377565082	chr3:93507170-93507171	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs370792985	chr3:93507174-93507175	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs201075637	chr3:93507175-93507176	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs138756177	chr3:93507201-93507202	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs543586488	chr3:93507207-93507208	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs544146747	chr3:93507210-93507211	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs556533560	chr3:93507211-93507212	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs111287817	chr3:93507218-93507219	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs200413656	chr3:93507245-93507246	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs367774055	chr3:93507262-93507263	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs543204204	chr3:93507271-93507272	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs560105568	chr3:93507288-93507289	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs371999260	chr3:93507307-93507308	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs528767432	chr3:93507324-93507325	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs578038692	chr3:93507334-93507335	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs545566432	chr3:93507340-93507341	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs544537828	chr3:93507393-93507394	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs112626100	chr3:93507396-93507397	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs532934345	chr3:93507403-93507404	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs201278916	chr3:93507404-93507405	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs549659532	chr3:93507429-93507430	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs201234238	chr3:93507465-93507466	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs188670386	chr3:93507467-93507468	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs569366070	chr3:93507481-93507482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs535276877	chr3:93507511-93507512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs149996284	chr3:93507514-93507515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs374024173	chr3:93507527-93507528	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs200349892	chr3:93507540-93507541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs548730822	chr3:93507542-93507543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs201685132	chr3:93507566-93507567	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs137989370	chr3:93507567-93507568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs565657384	chr3:93507589-93507590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs199770109	chr3:93507592-93507593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs534636386	chr3:93507594-93507595	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs558016651	chr3:93507595-93507596	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs200758819	chr3:93507634-93507635	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs577989974	chr3:93507650-93507651	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs537449310	chr3:93507665-93507666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs149090202	chr3:93507678-93507679	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs557492001	chr3:93507682-93507683	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs149472422	chr3:93507701-93507702	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs199722543	chr3:93507702-93507703	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs113800427	chr3:93507719-93507720	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs147513331	chr3:93507726-93507727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs200674195	chr3:93507728-93507729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	21858020	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:93505000-93507400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr3:93505000-93508000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:93505000-93508000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr3:93505000-93508200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr3:93505000-93508200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr3:93506800-93507400	Active TSS	Aorta	Aorta
7	chr3:93508000-93510200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:93508000-93510400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:93508200-93510200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:93508200-93510200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:93510200-93512200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr3:93510200-93513200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr3:93510200-93515600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr3:93510400-93516600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:93511400-93511600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr3:93511600-93512600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr3:93512600-93513000	ZNF genes & repeats	Fetal Brain Male	brain
18	chr3:93513800-93514000	Active TSS	Aorta	Aorta
19	chr3:93514000-93514600	Weak transcription	Aorta	Aorta
20	chr3:93514600-93515200	Active TSS	Aorta	Aorta
21	chr3:93515000-93515200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:93515000-93516800	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links