Variant report

Variant	esv3376132
Chromosome Location	chr6:1610578-1613326
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:306)
CpG islands
(count:549)
Chromatin interactive
region (count:21)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:306 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr6:1611004-1611154	Hela-S3	cervix:	n/a	n/a
2	CCNT2	chr6:1612051-1612251	K562	blood:	n/a	n/a
3	CEBPB	chr6:1612221-1612392	Hela-S3	cervix:	n/a	n/a
4	CHD2	chr6:1610670-1611178	Hela-S3	cervix:	n/a	n/a
5	CHD2	chr6:1612215-1612260	HepG2	liver:	n/a	n/a
6	CHD2	chr6:1611590-1611790	Hela-S3	cervix:	n/a	n/a
7	CHD2	chr6:1612123-1612307	Hela-S3	cervix:	n/a	n/a
8	CREB1	chr6:1611688-1611937	A549	lung:	n/a	n/a
9	CTBP2	chr6:1610771-1611766	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr6:1611700-1611850	AoAF	blood vessel:	n/a	n/a
11	CTCF	chr6:1613269-1613552	IMR90	lung:	n/a	n/a
12	CTCF	chr6:1611640-1611790	HEK293	kidney:	n/a	n/a
13	CTCF	chr6:1611680-1611830	GM12868	blood:	n/a	n/a
14	CTCF	chr6:1611640-1611790	HEEpiC	esophagus:	n/a	n/a
15	CTCF	chr6:1611700-1611850	GM12870	blood:	n/a	n/a
16	CTCF	chr6:1611727-1611831	LNCaP	prostate:	n/a	n/a
17	CTCF	chr6:1611640-1611790	HCPEpiC	choroid plexus:	n/a	n/a
18	CTCF	chr6:1611620-1611770	HFF-Myc	foreskin:	n/a	n/a
19	CTCF	chr6:1611688-1611858	GM13977	blood:	n/a	n/a
20	CTCF	chr6:1611600-1611750	GM12875	blood:	n/a	n/a
21	CTCF	chr6:1612240-1612390	HEK293	kidney:	n/a	n/a
22	CTCF	chr6:1611660-1611810	HepG2	liver:	n/a	n/a
23	CTCF	chr6:1611660-1611810	AG04449	skin:	n/a	n/a
24	CTCF	chr6:1611450-1612038	A549	lung:	n/a	n/a
25	CTCF	chr6:1611594-1611840	HepG2	liver:	n/a	n/a
26	CTCF	chr6:1611660-1611810	GM12873	blood:	n/a	n/a
27	CTCF	chr6:1611674-1611816	A549	lung:	n/a	n/a
28	CTCF	chr6:1611640-1611790	AG04450	lung:	n/a	n/a
29	CTCF	chr6:1611640-1611790	SK-N-SH_RA	brain:	n/a	n/a
30	CTCF	chr6:1611660-1611810	BE2_C	brain:	n/a	n/a
31	CTCF	chr6:1611640-1611790	AG04449	skin:	n/a	n/a
32	CTCF	chr6:1611636-1611856	A549	lung:	n/a	n/a
33	CTCF	chr6:1611640-1611790	HPAF	blood vessel:	n/a	n/a
34	CTCF	chr6:1611680-1611830	NHDF-neo	bronchial:	n/a	n/a
35	CTCF	chr6:1611565-1611946	IMR90	lung:	n/a	n/a
36	CTCF	chr6:1611660-1611810	NHEK	skin:	n/a	n/a
37	CTCF	chr6:1611660-1611810	GM12875	blood:	n/a	n/a
38	CTCF	chr6:1611620-1611770	HRPEpiC	eye:	n/a	n/a
39	CTCF	chr6:1611687-1611874	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr6:1611640-1611790	HBMEC	blood vessel:	n/a	n/a
41	CTCF	chr6:1611700-1611850	GM12867	blood:	n/a	n/a
42	CTCF	chr6:1611712-1611836	GM20000	blood:	n/a	n/a
43	CTCF	chr6:1611641-1611847	NHEK	skin:	n/a	n/a
44	CTCF	chr6:1611660-1611810	AG09319	gingival:	n/a	n/a
45	CTCF	chr6:1611660-1611810	HMEC	breast:	n/a	n/a
46	CTCF	chr6:1611689-1611801	HepG2	liver:	n/a	n/a
47	CTCF	chr6:1611709-1611824	GM10248	blood:	n/a	n/a
48	CTCF	chr6:1611620-1611770	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr6:1611582-1611898	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr6:1611734-1611805	Kidney_OC	kidney:	n/a	n/a

(count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:1610688-1610738	HNPCEpiC	eye:	n/a
2	chr6:1611712-1611762	U87	brain:	n/a
3	chr6:1612301-1612351	Hepatocyte	liver:	n/a
4	chr6:1612301-1612351	HCF	heart:	n/a
5	chr6:1611745-1611795	MCF-7	breast:	n/a
6	chr6:1611712-1611762	CMK	blood:	n/a
7	chr6:1611451-1611501	PFSK-1	brain:	n/a
8	chr6:1611712-1611762	HNPCEpiC	eye:	n/a
9	chr6:1612589-1612639	AG09309	skin:	n/a
10	chr6:1612301-1612351	AG10803	skin:	n/a
11	chr6:1611451-1611501	HPAEpiC	pulmonary alveolar:	n/a
12	chr6:1612589-1612639	H1-hESC	embryonic stem cell:	embryo
13	chr6:1610673-1610723	LNCaP	prostate:	n/a
14	chr6:1610688-1610738	HepG2	liver:	n/a
15	chr6:1612589-1612639	Hepatocyte	liver:	n/a
16	chr6:1612301-1612351	GM19239	blood:	n/a
17	chr6:1610673-1610723	SKMC	muscle:	n/a
18	chr6:1612589-1612639	HAEpiC	amniotic membrane:	n/a
19	chr6:1610669-1610719	AG09309	skin:	n/a
20	chr6:1612301-1612351	RPTEC	kidney:	n/a
21	chr6:1611451-1611501	NH-A	brain:	n/a
22	chr6:1611712-1611762	BE2_C	brain:	n/a
23	chr6:1611850-1611900	MCF10A-Er-Src	breast:	n/a
24	chr6:1612589-1612639	SK-N-MC	brain:	n/a
25	chr6:1610688-1610738	HCPEpiC	choroid plexus:	n/a
26	chr6:1610669-1610719	GM12892	blood:	n/a
27	chr6:1611712-1611762	HEEpiC	esophagus:	n/a
28	chr6:1611712-1611762	HRE	kidney:	n/a
29	chr6:1612301-1612351	BE2_C	brain:	n/a
30	chr6:1610669-1610719	AG04450	lung:	fetal
31	chr6:1610688-1610738	A549	lung:	n/a
32	chr6:1612589-1612639	LNCaP	prostate:	n/a
33	chr6:1611745-1611795	AG09319	gingival:	n/a
34	chr6:1611712-1611762	HCPEpiC	choroid plexus:	n/a
35	chr6:1612589-1612639	HCM	heart:	n/a
36	chr6:1611451-1611501	MCF-7	breast:	n/a
37	chr6:1612301-1612351	AG09319	gingival:	n/a
38	chr6:1611712-1611762	ProgFib	skin:	n/a
39	chr6:1610669-1610719	HepG2	liver:	n/a
40	chr6:1610673-1610723	SK-N-SH_RA	brain:	n/a
41	chr6:1611712-1611762	GM12891	blood:	n/a
42	chr6:1611850-1611900	HEK293	kidney:	embryo
43	chr6:1611850-1611900	HL-60	blood:	n/a
44	chr6:1611745-1611795	HPAEpiC	pulmonary alveolar:	n/a
45	chr6:1611745-1611795	Jurkat	blood:	n/a
46	chr6:1611712-1611762	GM12878	blood:	n/a
47	chr6:1611745-1611795	HMEC	breast:	n/a
48	chr6:1610669-1610719	NHDF-neo	bronchial:	n/a
49	chr6:1611745-1611795	HNPCEpiC	eye:	n/a
50	chr6:1612589-1612639	PANC-1	pancreas:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:39900304..39901200-chr6:1610096..1610828,2	Hela-S3	cervix:
2	chr6:1612582..1614145-chr6:1846859..1849142,2	MCF-7	breast:
3	chr14:100658739..100659418-chr6:1609951..1610630,2	Hela-S3	cervix:
4	chr6:1609450..1612431-chr6:1929248..1931252,2	MCF-7	breast:
5	chr6:1612605..1614594-chr6:1617750..1620318,2	K562	blood:
6	chr6:1610083..1610592-chr8:77593010..77593516,2	HCT-116	colon:
7	chr21:27542375..27543109-chr6:1610318..1611312,2	Hela-S3	cervix:
8	chr6:1608353..1611335-chr6:2245492..2248463,2	MCF-7	breast:
9	chr6:1612951..1615735-chr6:3066934..3068619,2	MCF-7	breast:
10	chr1:183441719..183444081-chr6:1612481..1614965,2	MCF-7	breast:
11	chr17:41438452..41439029-chr6:1609999..1610656,2	Hela-S3	cervix:
12	chr6:1611214..1613001-chr6:2041317..2043810,2	MCF-7	breast:
13	chr6:1612577..1614591-chr6:1838798..1840944,2	MCF-7	breast:
14	chr6:1610715..1613985-chr6:2196585..2199138,3	MCF-7	breast:
15	chr6:1612762..1614490-chr6:1684651..1686337,2	MCF-7	breast:
16	chr6:1612565..1615275-chr6:1837590..1839107,2	MCF-7	breast:
17	chr6:1612494..1615565-chr6:2103145..2107069,5	MCF-7	breast:
18	chr6:1611913..1614321-chr6:1833472..1836057,3	MCF-7	breast:
19	chr6:1607121..1609914-chr6:1613223..1615033,2	K562	blood:
20	chr6:1612642..1614747-chr6:1828037..1830665,2	MCF-7	breast:
21	chr11:67887768..67889272-chr6:1609533..1611427,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GMDS-6	chr6:1612000-1612105	NONHSAT106529
2	lnc-FOXC1-3	chr6:1612577-1614127	NONHSAT106538
3	lnc-GMDS-6	chr6:1610339-1610832	NONHSAT106529

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FOXC1	hsa-miR-204-5p	chr6:1612961-1612968
2	FOXC1	hsa-miR-204-5p	chr6:1612948-1612968

Variant related genes	Relation type
FOXC1	TF binding region
FOXC1	CpG island
ENSG00000091656	chromatin interactions
ENSG00000112699	chromatin interactions
ENSG00000250903	chromatin interactions
ENSG00000116698	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000110721	chromatin interactions
ENSG00000142192	chromatin interactions

Extended variants
information (count: 126 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:126 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76225423	chr6:1610622-1610623	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
2	rs80204039	chr6:1610630-1610631	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
3	rs104893952	chr6:1610747-1610748	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
4	rs545478008	chr6:1610758-1610759	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
5	rs538126253	chr6:1610794-1610795	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
6	rs372857241	chr6:1610821-1610822	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
7	rs112885689	chr6:1610824-1610825	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
8	rs548226336	chr6:1610830-1610831	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
9	rs374448293	chr6:1610839-1610840	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs188085399	chr6:1610851-1610852	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs375581157	chr6:1610869-1610870	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs368260972	chr6:1610872-1610873	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs150084174	chr6:1610875-1610876	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs533710669	chr6:1610878-1610879	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs35168188	chr6:1610884-1610885	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs35974174	chr6:1610887-1610888	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs200040370	chr6:1610896-1610897	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs104893953	chr6:1610925-1610926	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs376405759	chr6:1610926-1610927	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs527271139	chr6:1610929-1610930	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs104893954	chr6:1610941-1610942	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs141798688	chr6:1610959-1610960	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs369078747	chr6:1610963-1610964	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs201891353	chr6:1610995-1610996	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs201072263	chr6:1611001-1611002	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs575996895	chr6:1611002-1611003	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs146275363	chr6:1611010-1611011	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs547414473	chr6:1611013-1611014	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs104893951	chr6:1611015-1611016	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs121909339	chr6:1611038-1611039	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs562544227	chr6:1611056-1611057	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs104893958	chr6:1611058-1611059	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs121909338	chr6:1611068-1611069	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs104893957	chr6:1611072-1611073	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs562467758	chr6:1611079-1611080	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs2230096	chr6:1611085-1611086	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs9502980	chr6:1611089-1611090	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs142581779	chr6:1611103-1611104	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs144066933	chr6:1611118-1611119	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs376255999	chr6:1611121-1611122	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs200100677	chr6:1611148-1611149	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs369346224	chr6:1611154-1611155	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs200884695	chr6:1611157-1611158	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs148739656	chr6:1611182-1611183	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs142371761	chr6:1611224-1611225	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs543542572	chr6:1611247-1611248	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs545282380	chr6:1611253-1611254	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs376935827	chr6:1611259-1611260	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs567719270	chr6:1611262-1611263	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs529227054	chr6:1611277-1611278	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:460 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1604200-1610800	Active TSS	Aorta	Aorta
2	chr6:1604400-1610800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:1605000-1610800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr6:1605600-1620800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:1607000-1612600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:1607800-1611200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:1607800-1611200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
8	chr6:1607800-1612000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
9	chr6:1608400-1612000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
10	chr6:1608600-1610600	Bivalent/Poised TSS	Thymus	Thymus
11	chr6:1608600-1611000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr6:1608600-1611200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:1608600-1611200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
14	chr6:1609000-1612000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:1609000-1612000	Active TSS	Ovary	ovary
16	chr6:1609000-1612200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:1609000-1615200	Active TSS	Right Atrium	heart
18	chr6:1609000-1615400	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr6:1609200-1610800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr6:1609200-1611400	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr6:1609200-1612200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:1609200-1612400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:1609200-1612800	Active TSS	HSMM	muscle
24	chr6:1609200-1614400	Active TSS	A549	lung
25	chr6:1609400-1611200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:1609400-1612200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:1609400-1612400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr6:1609400-1612600	Active TSS	HSMMtube	muscle
29	chr6:1609400-1616000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:1609600-1610600	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
31	chr6:1609600-1610800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:1609600-1610800	Active TSS	Left Ventricle	heart
33	chr6:1609600-1611200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:1609600-1611200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:1609600-1611200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:1609600-1612200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr6:1609600-1612400	Active TSS	NHEK	skin
38	chr6:1609600-1614400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:1609600-1614800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:1609600-1616000	Active TSS	Hela-S3	cervix
41	chr6:1609800-1610600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:1609800-1610600	Active TSS	Primary B cells from cord blood	blood
43	chr6:1609800-1610600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr6:1609800-1610600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:1609800-1610600	Active TSS	Fetal Kidney	kidney
46	chr6:1609800-1610600	Active TSS	Lung	lung
47	chr6:1609800-1610800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
48	chr6:1609800-1610800	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:1609800-1610800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:1609800-1610800	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood

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