Variant report

Variant	esv3376178
Chromosome Location	chr4:130175702-130181400
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538596296	chr4:130175745-130175746	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557314670	chr4:130175756-130175757	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575587998	chr4:130175767-130175768	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542880404	chr4:130175773-130175774	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2465800	chr4:130175798-130175799	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147317258	chr4:130175840-130175841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs114041028	chr4:130176010-130176011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7659117	chr4:130176011-130176012	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs372445015	chr4:130176024-130176025	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375769882	chr4:130176067-130176068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190706881	chr4:130176084-130176085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs183274907	chr4:130176128-130176129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs533186365	chr4:130176155-130176156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs551721552	chr4:130176167-130176168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs189074098	chr4:130176239-130176240	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs542254424	chr4:130176244-130176245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs549205810	chr4:130176284-130176285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs567516349	chr4:130176304-130176305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs535180735	chr4:130176307-130176308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561983242	chr4:130176322-130176323	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs566024912	chr4:130176349-130176350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546395155	chr4:130176363-130176364	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130175200-130175800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:130175400-130175800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:130175800-130176400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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