Variant report

Variant	esv3376315
Chromosome Location	chr8:36178034-36180580
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:36180349-36180363	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr8:36178796-36178831	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-419C23.1.1-8	chr8:36178665-36178922	NONHSAT126017
2	lnc-RP11-419C23.1.1-8	chr8:36178557-36178598	NONHSAT126017

Variant related genes	Relation type
ENSG00000254320	TF binding region

Extended variants
information (count: 121 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:121 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536629148	chr8:36178573-36178574	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs570069176	chr8:36178676-36178677	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs557701980	chr8:36178690-36178691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs532331631	chr8:36178728-36178729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs558889009	chr8:36178744-36178745	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs577327756	chr8:36178795-36178796	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs535048544	chr8:36178811-36178812	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
8	rs139119737	chr8:36178820-36178821	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs630767	chr8:36178849-36178850	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs541439173	chr8:36178852-36178853	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs141696207	chr8:36178859-36178860	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
12	rs146973009	chr8:36178888-36178889	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs545840722	chr8:36178913-36178914	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs371086504	chr8:36178924-36178925	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs369252284	chr8:36178926-36178927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs189112367	chr8:36178928-36178929	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs569258655	chr8:36178930-36178931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs561950049	chr8:36178934-36178935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs373333465	chr8:36178938-36178939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs11990646	chr8:36178957-36178958	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs138116023	chr8:36178958-36178959	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs11990647	chr8:36178960-36178961	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs548625830	chr8:36178978-36178979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs377476213	chr8:36178984-36178985	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs1089365	chr8:36178988-36178989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs1089366	chr8:36178997-36178998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs186086473	chr8:36178998-36178999	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs1089367	chr8:36179004-36179005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs71513782	chr8:36179022-36179023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs11998061	chr8:36179027-36179028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs71506561	chr8:36179029-36179030	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs11990685	chr8:36179033-36179034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs552632086	chr8:36179034-36179035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs376197737	chr8:36179035-36179036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs1089368	chr8:36179040-36179041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs1089369	chr8:36179056-36179057	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs189963282	chr8:36179064-36179065	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs1089370	chr8:36179066-36179067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs534873622	chr8:36179073-36179074	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs1089371	chr8:36179075-36179076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs554279700	chr8:36179083-36179084	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs801688	chr8:36179084-36179085	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs78679489	chr8:36179095-36179096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs79611494	chr8:36179097-36179098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs75166956	chr8:36179105-36179106	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs74652934	chr8:36179107-36179108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs574814453	chr8:36179108-36179109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs143701949	chr8:36179110-36179111	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs801689	chr8:36179114-36179115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs556690112	chr8:36179130-36179131	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Multiple myeloma	16616336	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	21806811	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hepatocellular carcinoma	16750200	CNVD
Bladder cancer	19088036	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	20459607	CNVD
Renal cell carcinoma	18765545	CNVD
Colorectal cancer	16912164	CNVD
Neuroticism	17667963	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17001308	CNVD
Breast cancer	17157792	CNVD
Cancer	17001308	CNVD
Cancer	18840272	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	18382360	CNVD
Ductal carcinoma	18381933	CNVD
Breast cancer	21328542	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Intellectual disability	22045946	CNVD
Lung cancer	17925434	CNVD
Uveal melanoma	20484589	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	19651600	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36178800-36180000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:36179800-36180200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links