Variant report

Variant	esv3377264
Chromosome Location	chr19:27745545-27755805
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1290 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:1290 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569331207	chr19:27745548-27745549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs113923363	chr19:27745559-27745560	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs199572508	chr19:27745561-27745562	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79467412	chr19:27745563-27745564	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs76592350	chr19:27745564-27745565	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183824754	chr19:27745571-27745572	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75380111	chr19:27745574-27745575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201830990	chr19:27745575-27745576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs199698404	chr19:27745577-27745578	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs557300455	chr19:27745589-27745590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs113167534	chr19:27745597-27745598	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112105594	chr19:27745598-27745599	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs534147295	chr19:27745608-27745609	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs56071386	chr19:27745616-27745617	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs570846347	chr19:27745619-27745620	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs537442055	chr19:27745625-27745626	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555836987	chr19:27745626-27745627	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192804925	chr19:27745636-27745637	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574381376	chr19:27745637-27745638	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192716576	chr19:27745651-27745652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs77747654	chr19:27745652-27745653	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs78598376	chr19:27745664-27745665	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141478399	chr19:27745674-27745675	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35891449	chr19:27745681-27745682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572246046	chr19:27745688-27745689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs546054484	chr19:27745708-27745709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200803183	chr19:27745712-27745713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531684317	chr19:27745717-27745718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs62133541	chr19:27745718-27745719	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111759843	chr19:27745731-27745732	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62133542	chr19:27745737-27745738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62133543	chr19:27745740-27745741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs62133544	chr19:27745747-27745748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs112465853	chr19:27745752-27745753	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs543705285	chr19:27745761-27745762	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562700642	chr19:27745767-27745768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201881805	chr19:27745768-27745769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs62133545	chr19:27745769-27745770	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62133546	chr19:27745773-27745774	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113133832	chr19:27745776-27745777	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs62133547	chr19:27745777-27745778	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62133548	chr19:27745780-27745781	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62133549	chr19:27745790-27745791	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530124131	chr19:27745795-27745796	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs184220805	chr19:27745796-27745797	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147496768	chr19:27745809-27745810	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566654904	chr19:27745811-27745812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs527866064	chr19:27745813-27745814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78618506	chr19:27745816-27745817	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552396777	chr19:27745835-27745836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27740800-27755200	Weak transcription	K562	blood
2	chr19:27742800-27746200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:27743400-27746000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr19:27743600-27745600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr19:27743600-27745600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:27743600-27746000	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:27745200-27745800	ZNF genes & repeats	HUVEC	blood vessel
8	chr19:27745400-27746200	Weak transcription	NH-A	brain
9	chr19:27745800-27749600	Weak transcription	HUVEC	blood vessel
10	chr19:27747200-27749600	Weak transcription	NH-A	brain
11	chr19:27749000-27749600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:27749200-27761200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:27749400-27750800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr19:27749400-27761200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr19:27749400-27761400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
16	chr19:27749600-27749800	ZNF genes & repeats	HUVEC	blood vessel
17	chr19:27749600-27749800	ZNF genes & repeats	NH-A	brain
18	chr19:27749600-27750000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:27749600-27750400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr19:27749600-27750400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
21	chr19:27749600-27750400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr19:27749600-27761000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr19:27749800-27750400	Active TSS	Aorta	Aorta
24	chr19:27749800-27750400	ZNF genes & repeats	Liver	Liver
25	chr19:27749800-27750600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr19:27749800-27756600	Weak transcription	NH-A	brain
27	chr19:27750000-27750600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr19:27750000-27750600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:27750000-27750600	ZNF genes & repeats	Colon Smooth Muscle	Colon
30	chr19:27750000-27752200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr19:27750200-27750400	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr19:27750200-27750600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:27750200-27750600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
34	chr19:27750200-27750600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:27750200-27750600	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr19:27750200-27750600	ZNF genes & repeats	Small Intestine	intestine
37	chr19:27750400-27750600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr19:27750600-27752800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr19:27750600-27752800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:27750600-27753400	Weak transcription	Colon Smooth Muscle	Colon
41	chr19:27750800-27752400	Weak transcription	Liver	Liver
42	chr19:27750800-27752600	Weak transcription	Psoas Muscle	Psoas
43	chr19:27752200-27753000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr19:27752600-27753200	ZNF genes & repeats	Liver	Liver
45	chr19:27752800-27753400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
46	chr19:27752800-27753600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:27752800-27757000	ZNF genes & repeats	HUVEC	blood vessel
48	chr19:27753000-27753200	ZNF genes & repeats	Fetal Heart	heart
49	chr19:27753200-27753400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
50	chr19:27753400-27754000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links