Variant report

Variant	esv3377501
Chromosome Location	chr7:99955417-99960583
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:307)
CpG islands
(count:122)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr7:99956227-99956510	GM12878	blood:	n/a	n/a
2	BCL11A	chr7:99956300-99956507	GM12878	blood:	n/a	n/a
3	BCL11A	chr7:99956180-99956521	GM12878	blood:	n/a	n/a
4	BHLHE40	chr7:99956248-99956448	GM12878	blood:	n/a	n/a
5	CEBPB	chr7:99957894-99958017	HepG2	liver:	n/a	chr7:99957972-99957983 chr7:99957945-99957956
6	CEBPB	chr7:99957906-99958059	A549	lung:	n/a	chr7:99957972-99957983 chr7:99957945-99957956
7	CTCF	chr7:99956130-99956530	K562	blood:	n/a	n/a
8	CTCF	chr7:99956380-99956530	GM12871	blood:	n/a	n/a
9	CTCF	chr7:99956460-99956610	GM12873	blood:	n/a	n/a
10	CTCF	chr7:99956156-99956469	GM19240	blood:	n/a	n/a
11	CTCF	chr7:99956200-99956350	GM12871	blood:	n/a	n/a
12	CTCF	chr7:99956140-99956290	GM12878	blood:	n/a	n/a
13	CTCF	chr7:99956260-99956410	SK-N-SH_RA	brain:	n/a	n/a
14	CTCF	chr7:99956160-99956310	GM12864	blood:	n/a	n/a
15	CTCF	chr7:99956160-99956310	NHEK	skin:	n/a	n/a
16	CTCF	chr7:99956160-99956310	HepG2	liver:	n/a	n/a
17	CTCF	chr7:99956200-99956350	GM12869	blood:	n/a	n/a
18	CTCF	chr7:99956200-99956350	MCF-7	breast:	n/a	n/a
19	CTCF	chr7:99956138-99956464	GM19239	blood:	n/a	n/a
20	CTCF	chr7:99956273-99956427	IMR90	lung:	n/a	n/a
21	CTCF	chr7:99956278-99956401	LNCaP	prostate:	n/a	n/a
22	CTCF	chr7:99956200-99956350	GM12867	blood:	n/a	n/a
23	CTCF	chr7:99956160-99956310	AG09309	skin:	n/a	n/a
24	CTCF	chr7:99956160-99956310	GM12875	blood:	n/a	n/a
25	CTCF	chr7:99956468-99956473	GM12891	blood:	n/a	n/a
26	CTCF	chr7:99956180-99956419	MCF-7	breast:	n/a	n/a
27	CTCF	chr7:99955998-99956103	GM19238	blood:	n/a	n/a
28	CTCF	chr7:99956180-99956330	HA-sp	spinal cord:	n/a	n/a
29	CTCF	chr7:99955948-99956012	GM12892	blood:	n/a	n/a
30	CTCF	chr7:99956160-99956310	HMF	breast:	n/a	n/a
31	CTCF	chr7:99956226-99956411	HepG2	liver:	n/a	n/a
32	CTCF	chr7:99956204-99956404	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr7:99956281-99956309	LNCaP	prostate:	n/a	n/a
34	CTCF	chr7:99956200-99956350	HCT-116	colon:	n/a	n/a
35	CTCF	chr7:99956200-99956350	GM12872	blood:	n/a	n/a
36	CTCF	chr7:99956124-99956467	GM12891	blood:	n/a	n/a
37	CTCF	chr7:99956160-99956310	HPF	lung:	n/a	n/a
38	CTCF	chr7:99956182-99956407	MCF-7	breast:	n/a	n/a
39	CTCF	chr7:99956160-99956310	AG09319	gingival:	n/a	n/a
40	CTCF	chr7:99956185-99956411	GM10266	blood:	n/a	n/a
41	CTCF	chr7:99956180-99956330	GM12871	blood:	n/a	n/a
42	CTCF	chr7:99956191-99956420	MCF-7	breast:	n/a	n/a
43	CTCF	chr7:99956180-99956330	HVMF	connective:	n/a	n/a
44	CTCF	chr7:99956140-99956290	BJ	skin:	n/a	n/a
45	CTCF	chr7:99956177-99956409	GM10248	blood:	n/a	n/a
46	CTCF	chr7:99956219-99956413	GM20000	blood:	n/a	n/a
47	CTCF	chr7:99955920-99956070	GM12870	blood:	n/a	n/a
48	CTCF	chr7:99956380-99956530	RPTEC	kidney:	n/a	n/a
49	CTCF	chr7:99956200-99956350	GM12870	blood:	n/a	n/a
50	CTCF	chr7:99956200-99956350	HAc	cerebellar:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:99955675-99955725	NHDF-neo	bronchial:	n/a
2	chr7:99955675-99955725	GM12892	blood:	n/a
3	chr7:99955675-99955725	HMEC	breast:	n/a
4	chr7:99955675-99955725	AG09309	skin:	n/a
5	chr7:99955675-99955725	SK-N-MC	brain:	n/a
6	chr7:99955675-99955725	H1-hESC	embryonic stem cell:	embryo
7	chr7:99956107-99956157	SK-N-SH	brain:	n/a
8	chr7:99955675-99955725	BE2_C	brain:	n/a
9	chr7:99956107-99956157	HL-60	blood:	n/a
10	chr7:99955675-99955725	GM12878	blood:	n/a
11	chr7:99956107-99956157	T-47D	breast:	n/a
12	chr7:99955675-99955725	AG04449	skin:	fetal
13	chr7:99955675-99955725	HRE	kidney:	n/a
14	chr7:99956107-99956157	HCF	heart:	n/a
15	chr7:99956107-99956157	U87	brain:	n/a
16	chr7:99955675-99955725	CMK	blood:	n/a
17	chr7:99956107-99956157	HMEC	breast:	n/a
18	chr7:99956107-99956157	AG09309	skin:	n/a
19	chr7:99955675-99955725	ProgFib	skin:	n/a
20	chr7:99956107-99956157	NHDF-neo	bronchial:	n/a
21	chr7:99955675-99955725	MCF-7	breast:	n/a
22	chr7:99956107-99956157	HIPEpiC	eye:	n/a
23	chr7:99956107-99956157	HPAEpiC	pulmonary alveolar:	n/a
24	chr7:99955675-99955725	HUVEC	blood vessel:	n/a
25	chr7:99955675-99955725	GM19239	blood:	n/a
26	chr7:99956107-99956157	AG04449	skin:	fetal
27	chr7:99956107-99956157	Caco-2	colon:	n/a
28	chr7:99955675-99955725	HCM	heart:	n/a
29	chr7:99955675-99955725	GM12891	blood:	n/a
30	chr7:99955675-99955725	AG10803	skin:	n/a
31	chr7:99956107-99956157	BE2_C	brain:	n/a
32	chr7:99955675-99955725	ovcar-3	ovarian:	n/a
33	chr7:99956107-99956157	GM12878	blood:	n/a
34	chr7:99956107-99956157	Jurkat	blood:	n/a
35	chr7:99955675-99955725	HepG2	liver:	n/a
36	chr7:99956107-99956157	HepG2	liver:	n/a
37	chr7:99955675-99955725	K562	blood:	n/a
38	chr7:99955675-99955725	HEEpiC	esophagus:	n/a
39	chr7:99956107-99956157	A549	lung:	n/a
40	chr7:99956107-99956157	GM12892	blood:	n/a
41	chr7:99955675-99955725	PFSK-1	brain:	n/a
42	chr7:99956107-99956157	Hela-S3	cervix:	n/a
43	chr7:99956107-99956157	HRCEpiC	kidney:	n/a
44	chr7:99955675-99955725	GM06990	blood:	n/a
45	chr7:99956107-99956157	ovcar-3	ovarian:	n/a
46	chr7:99955675-99955725	SKMC	muscle:	n/a
47	chr7:99956107-99956157	HEK293	kidney:	embryo
48	chr7:99955675-99955725	PrEC	prostate:	n/a
49	chr7:99955675-99955725	T-47D	breast:	n/a
50	chr7:99956107-99956157	SAEC	small airway:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99945120..99946950-chr7:99959352..99960868,2	K562	blood:
2	chr7:99947002..99949719-chr7:99957525..99959319,2	MCF-7	breast:
3	chr7:99958168..99959923-chr7:100024944..100026496,2	MCF-7	breast:
4	chr7:99944424..99947012-chr7:99956430..99960852,3	K562	blood:
5	chr7:99954086..99956374-chr7:100025281..100027347,2	MCF-7	breast:
6	chr7:99952374..99954979-chr7:99956728..99958286,2	MCF-7	breast:
7	chr7:99955250..99958076-chr7:99963058..99965429,2	K562	blood:
8	chr7:99959399..99961103-chr7:100026312..100027902,2	K562	blood:
9	chr7:99956089..99957911-chr7:100026072..100027787,2	K562	blood:
10	chr7:99958632..99960421-chr7:100025075..100027973,2	K562	blood:
11	chr7:99955988..99956495-chr7:99971050..99971685,2	MCF-7	breast:
12	chr7:99955962..99956763-chr7:100004904..100005531,2	MCF-7	breast:
13	chr7:99956811..99958852-chr7:99961278..99963272,2	MCF-7	breast:
14	chr7:99953591..99956597-chr7:99962899..99966077,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PILRB-1	chr7:99955843-99955915	ENSG00000272752.1

No data

Variant related genes	Relation type
PILRA	TF binding region
PILRB	TF binding region
PILRA	CpG island
PILRB	CpG island
ENSG00000146834	chromatin interactions
ENSG00000078487	chromatin interactions
ENSG00000272752	chromatin interactions
ENSG00000121716	chromatin interactions
ENSG00000085514	chromatin interactions

Extended variants
information (count: 250 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:250 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545151943	chr7:99955460-99955461	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs560219467	chr7:99955465-99955466	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs572291849	chr7:99955468-99955469	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs542687969	chr7:99955480-99955481	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs371805156	chr7:99955481-99955482	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs374490057	chr7:99955489-99955490	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs560866752	chr7:99955496-99955497	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs531287561	chr7:99955528-99955529	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs191934850	chr7:99955591-99955592	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs564959190	chr7:99955616-99955617	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs377261043	chr7:99955639-99955640	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs532619243	chr7:99955738-99955739	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs140227282	chr7:99955768-99955769	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs566277768	chr7:99955862-99955863	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
15	rs61735533	chr7:99955866-99955867	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs548223091	chr7:99955867-99955868	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
17	rs372012445	chr7:99955883-99955884	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
18	rs566041241	chr7:99955884-99955885	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
19	rs569715877	chr7:99955902-99955903	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
20	rs202213596	chr7:99955903-99955904	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
21	rs373007055	chr7:99955905-99955906	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
22	rs558638975	chr7:99955926-99955927	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs200179542	chr7:99955932-99955933	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs375628554	chr7:99955966-99955967	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs538494577	chr7:99955969-99955970	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs375562937	chr7:99956005-99956006	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs373307150	chr7:99956006-99956007	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs376440840	chr7:99956007-99956008	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs373256878	chr7:99956024-99956025	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs59251177	chr7:99956031-99956032	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs201743262	chr7:99956039-99956040	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs542947656	chr7:99956078-99956079	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs554864325	chr7:99956108-99956109	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs536657907	chr7:99956116-99956117	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs578188263	chr7:99956121-99956122	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs576123697	chr7:99956142-99956143	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs543414437	chr7:99956153-99956154	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs564857393	chr7:99956190-99956191	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs532219034	chr7:99956200-99956201	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs541303061	chr7:99956233-99956234	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs111877797	chr7:99956257-99956258	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs368169830	chr7:99956286-99956287	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs2906644	chr7:99956290-99956291	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	mRNA abundance
44	rs375943850	chr7:99956299-99956300	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs183553926	chr7:99956336-99956337	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs369794042	chr7:99956338-99956339	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs187902755	chr7:99956351-99956352	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs367592690	chr7:99956376-99956377	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs201138053	chr7:99956383-99956384	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs552530478	chr7:99956389-99956390	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	22237106	CNVD

Chromatin state (count:208 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99934000-99977600	Weak transcription	Fetal Brain Male	brain
2	chr7:99934400-99963400	Weak transcription	Psoas Muscle	Psoas
3	chr7:99934800-99963800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:99935400-99962200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:99935400-99962400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:99937600-99967800	Strong transcription	Fetal Stomach	stomach
7	chr7:99938600-99967400	Strong transcription	Fetal Brain Female	brain
8	chr7:99938800-99962400	Strong transcription	Dnd41	blood
9	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
10	chr7:99942600-99960800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:99942800-99963600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:99942800-99966400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:99942800-99966400	Strong transcription	A549	lung
14	chr7:99942800-99967000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:99942800-99967400	Strong transcription	Fetal Intestine Small	intestine
16	chr7:99943000-99957200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:99943200-99962000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:99943200-99962600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:99943200-99965400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:99943400-99960600	Strong transcription	Brain Angular Gyrus	brain
21	chr7:99943400-99961400	Strong transcription	Liver	Liver
22	chr7:99943400-99961600	Strong transcription	HepG2	liver
23	chr7:99943400-99962400	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr7:99943400-99963200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:99943400-99963200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:99943400-99966800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:99943400-99967200	Strong transcription	Fetal Intestine Large	intestine
28	chr7:99943600-99959600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr7:99943600-99962200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:99943600-99962400	Strong transcription	Brain Hippocampus Middle	brain
31	chr7:99943600-99962400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr7:99943600-99962400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr7:99943800-99960000	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr7:99943800-99960400	Strong transcription	NHLF	lung
35	chr7:99943800-99960600	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr7:99943800-99960800	Strong transcription	Left Ventricle	heart
37	chr7:99943800-99962400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:99943800-99962600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:99943800-99963200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:99943800-99963800	Strong transcription	Placenta	Placenta
41	chr7:99944000-99960200	Strong transcription	Gastric	stomach
42	chr7:99944000-99961400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:99944000-99961600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr7:99944000-99962400	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr7:99944000-99967000	Strong transcription	Brain Anterior Caudate	brain
46	chr7:99944200-99959400	Strong transcription	Colonic Mucosa	Colon
47	chr7:99944200-99959800	Strong transcription	Esophagus	oesophagus
48	chr7:99944200-99960200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:99944200-99961400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:99944200-99961600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links