Variant report

Variant	esv3377862
Chromosome Location	chr10:691018-691343
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:690946-691210	HEK293	kidney:	n/a	n/a
2	SETDB1	chr10:690767-691398	U2OS	brain:	n/a	n/a
3	ZNF263	chr10:690786-691054	HEK293-T-REx	kidney:	n/a	chr10:690889-690910

Variant related genes	Relation type
MIR5699	TF binding region
PRR26	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375372379	chr10:691097-691098	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
2	rs538607385	chr10:691118-691119	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
3	rs554548823	chr10:691127-691128	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
4	rs370801357	chr10:691128-691129	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
5	rs897580	chr10:691170-691171	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs192611517	chr10:691199-691200	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
7	rs76732524	chr10:691240-691241	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
8	rs368854908	chr10:691248-691249	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
9	rs11253292	chr10:691261-691262	Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:672000-700000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:672600-695800	Weak transcription	NHLF	lung
3	chr10:681800-696200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:683000-696000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:684200-700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:685600-699800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:685800-695200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:686200-696200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:687400-700000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:687600-695200	Weak transcription	Right Ventricle	heart
11	chr10:688800-693400	Weak transcription	Pancreas	Pancrea
12	chr10:688800-694400	Weak transcription	Gastric	stomach
13	chr10:688800-698200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:688800-702600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:689200-696000	Weak transcription	Psoas Muscle	Psoas
16	chr10:690000-691600	ZNF genes & repeats	Fetal Stomach	stomach
17	chr10:690200-691200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
18	chr10:690200-691400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr10:690400-691400	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr10:690400-691400	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr10:690400-691400	ZNF genes & repeats	Left Ventricle	heart
22	chr10:690400-691600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:690400-691600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:690600-691200	ZNF genes & repeats	Aorta	Aorta
25	chr10:690600-691400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:690600-691400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:690600-691400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:690600-691400	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr10:690600-691400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr10:690600-691400	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr10:690600-691400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr10:690600-691400	ZNF genes & repeats	Fetal Lung	lung
33	chr10:690600-691400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
34	chr10:690600-691600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:690600-692000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr10:690800-691200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:690800-691200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:690800-691200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
39	chr10:690800-691200	ZNF genes & repeats	HSMM	muscle
40	chr10:690800-691400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:690800-691400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:690800-691400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:690800-691400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:690800-691800	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr10:691000-691200	ZNF genes & repeats	Osteobl	bone
46	chr10:691000-691400	ZNF genes & repeats	Brain Hippocampus Middle	brain
47	chr10:691200-692000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:691200-695600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:691200-704200	Weak transcription	HSMM	muscle
50	chr10:691200-704800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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