Variant report

Variant	esv3378166
Chromosome Location	chrX:77799655-77809370
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569175542	chrX:77803002-77803003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs534100829	chrX:77803172-77803173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs16978773	chrX:77803301-77803302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs138779397	chrX:77803338-77803339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs184041971	chrX:77803361-77803362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs142809967	chrX:77803549-77803550	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs200860287	chrX:77803580-77803581	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs73508757	chrX:77803591-77803592	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs147422323	chrX:77803630-77803631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs188727446	chrX:77803633-77803634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181390691	chrX:77803647-77803648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184460235	chrX:77803653-77803654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139211764	chrX:77803699-77803700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs536937718	chrX:77803890-77803891	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs5958834	chrX:77803904-77803905	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs373177856	chrX:77803907-77803908	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs149452275	chrX:77803985-77803986	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs374643861	chrX:77804025-77804026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs112580519	chrX:77804046-77804047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs554694010	chrX:77804087-77804088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs190429257	chrX:77804089-77804090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs182072373	chrX:77804184-77804185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs10126095	chrX:77804240-77804241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs187431983	chrX:77804266-77804267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs756384	chrX:77804280-77804281	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs566855943	chrX:77804383-77804384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs200163687	chrX:77804422-77804423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs200740017	chrX:77804424-77804425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs202014058	chrX:77804428-77804429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112759755	chrX:77804434-77804435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs397896679	chrX:77804467-77804468	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Autism	22495311	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
Premature ovarian failure	20952765	CNVD
Astrocytoma	22246337	CNVD
Mental retardation	17339581	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77803000-77803400	Enhancers	Muscle Satellite Cultured Cells	--
2	chrX:77803400-77803600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chrX:77803400-77804000	Enhancers	NHDF-Ad	bronchial
4	chrX:77803400-77804000	Enhancers	NHEK	skin
5	chrX:77803400-77804200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chrX:77803600-77803800	Enhancers	Muscle Satellite Cultured Cells	--
7	chrX:77803800-77804000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chrX:77804000-77804400	Enhancers	Muscle Satellite Cultured Cells	--
9	chrX:77804000-77804600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links