Variant report

Variant	esv3378378
Chromosome Location	chr9:8353052-8355100
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:115 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs60965360	chr9:8353089-8353090	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs369226057	chr9:8353101-8353102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs146538425	chr9:8353105-8353106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112893165	chr9:8353119-8353120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141298533	chr9:8353149-8353150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550981636	chr9:8353173-8353174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569518023	chr9:8353174-8353175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs12343245	chr9:8353209-8353210	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs548338026	chr9:8353266-8353267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550449860	chr9:8353267-8353268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566536417	chr9:8353275-8353276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs572830844	chr9:8353287-8353288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs193112323	chr9:8353381-8353382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558484587	chr9:8353387-8353388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570666847	chr9:8353421-8353422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs35878289	chr9:8353424-8353425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs71317360	chr9:8353426-8353427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529459852	chr9:8353429-8353430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs34373122	chr9:8353433-8353434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs398010271	chr9:8353442-8353443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556182715	chr9:8353499-8353500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574321929	chr9:8353501-8353502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs143649749	chr9:8353502-8353503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs146858920	chr9:8353509-8353510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572973616	chr9:8353519-8353520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540277682	chr9:8353545-8353546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140548888	chr9:8353558-8353559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs532398498	chr9:8353576-8353577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544916120	chr9:8353582-8353583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370290984	chr9:8353591-8353592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184788212	chr9:8353592-8353593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs75885112	chr9:8353593-8353594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs116113522	chr9:8353601-8353602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs150490269	chr9:8353624-8353625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566572675	chr9:8353702-8353703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs138318693	chr9:8353706-8353707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149208777	chr9:8353709-8353710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145771785	chr9:8353721-8353722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537422762	chr9:8353749-8353750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs138612634	chr9:8353769-8353770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs187548347	chr9:8353779-8353780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200070227	chr9:8353809-8353810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200865664	chr9:8353818-8353819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200291360	chr9:8353819-8353820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs535289156	chr9:8353820-8353821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs144699728	chr9:8353830-8353831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139972204	chr9:8353831-8353832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs398113201	chr9:8353833-8353834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs59039961	chr9:8353841-8353842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12342519	chr9:8353842-8353843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
7	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8350000-8363800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8350200-8364600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:8350200-8372400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:8350400-8363200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8350400-8364000	Weak transcription	Fetal Heart	heart
13	chr9:8351600-8355600	Weak transcription	Fetal Lung	lung
14	chr9:8353200-8364200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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