Variant report

Variant	esv3378983
Chromosome Location	chr8:78275446-78299043
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFHX4-3	chr8:78290938-78290976	XLOC_006852
2	lnc-ZFHX4-3	chr8:78290937-78290976	NONHSAT127353

Variant related genes	Relation type
TMEM100	miRNA target sites

Extended variants
information (count: 49 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545926400	chr8:78290437-78290438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs557708411	chr8:78290459-78290460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs576075249	chr8:78290495-78290496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs543746338	chr8:78290502-78290503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs559093842	chr8:78290551-78290552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529562400	chr8:78290637-78290638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs114185227	chr8:78290643-78290644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs560024399	chr8:78290655-78290656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs533039942	chr8:78290657-78290658	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs528046874	chr8:78290667-78290668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs146041664	chr8:78290696-78290697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs559559625	chr8:78290727-78290728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs530484973	chr8:78290736-78290737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs138749893	chr8:78290751-78290752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs112945644	chr8:78290767-78290768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534629120	chr8:78290783-78290784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs553116344	chr8:78290784-78290785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs571135193	chr8:78290789-78290790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539543142	chr8:78290824-78290825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs530116978	chr8:78290847-78290848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557870143	chr8:78290853-78290854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs576135025	chr8:78290857-78290858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs537403278	chr8:78290860-78290861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs186763118	chr8:78290886-78290887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs555496959	chr8:78290894-78290895	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs146250395	chr8:78290896-78290897	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs148447178	chr8:78290901-78290902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs559987479	chr8:78290902-78290903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs141473285	chr8:78290920-78290921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs545629920	chr8:78290963-78290964	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs150838924	chr8:78290983-78290984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs530543085	chr8:78291003-78291004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs563463175	chr8:78291073-78291074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs191718152	chr8:78291082-78291083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs181326147	chr8:78291206-78291207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs185642369	chr8:78291224-78291225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs190033602	chr8:78291245-78291246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs571101082	chr8:78291272-78291273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs142991485	chr8:78291324-78291325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs34470037	chr8:78291325-78291326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs3048758	chr8:78291327-78291328	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs78698740	chr8:78291328-78291329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs372776306	chr8:78291330-78291331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs75527440	chr8:78291421-78291422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs182265152	chr8:78291475-78291476	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs569785238	chr8:78291478-78291479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs537163923	chr8:78291510-78291511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs371460334	chr8:78291561-78291562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs530912418	chr8:78293781-78293782	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
Sezary syndrome	18413736	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	17016436	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	19455253	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Urothelial cell carcinoma	18451213	CNVD
Intellectual disability	21802062	CNVD
Myelodysplastic syndrome	18508791	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78290400-78291600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:78290600-78291000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:78290800-78291000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:78293600-78293800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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