Variant report

Variant	esv3380717
Chromosome Location	chr4:104357853-104359801
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CISD2-3	chr4:104358084-104358203	NONHSAT097630
2	lnc-CISD2-3	chr4:104358092-104358203	XLOC_003629
3	lnc-CISD2-3	chr4:104358874-104358999	NONHSAT097630
4	lnc-CISD2-3	chr4:104358092-104358203	ENSG00000248740
5	lnc-CISD2-3	chr4:104358092-104358203	NONHSAT097632
6	lnc-CISD2-3	chr4:104358875-104358999	XLOC_003629
7	lnc-CISD2-3	chr4:104358092-104358203	XLOC_003629
8	lnc-CISD2-3	chr4:104358092-104358203	ENSG00000248740
9	lnc-CISD2-3	chr4:104358092-104358203	XLOC_003629
10	lnc-CISD2-3	chr4:104358875-104358999	ENSG00000248740
11	lnc-CISD2-3	chr4:104358092-104358203	XLOC_003629

No data

Variant related genes	Relation type
EIF2C1	miRNA target sites

Extended variants
information (count: 86 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138782175	chr4:104357874-104357875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs544995202	chr4:104357889-104357890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377021467	chr4:104357903-104357904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs191173213	chr4:104357968-104357969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557329915	chr4:104357984-104357985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs141850299	chr4:104358024-104358025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559880225	chr4:104358025-104358026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs536594082	chr4:104358055-104358056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs554932221	chr4:104358098-104358099	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs150779545	chr4:104358204-104358205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111456732	chr4:104358217-104358218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571737599	chr4:104358234-104358235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182016216	chr4:104358270-104358271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187675349	chr4:104358325-104358326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs139140141	chr4:104358353-104358354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543608653	chr4:104358362-104358363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563385305	chr4:104358372-104358373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529180056	chr4:104358384-104358385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542980237	chr4:104358386-104358387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559760434	chr4:104358427-104358428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527492473	chr4:104358455-104358456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551861766	chr4:104358484-104358485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs191552223	chr4:104358513-104358514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530960980	chr4:104358524-104358525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150964287	chr4:104358551-104358552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369631712	chr4:104358552-104358553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551150681	chr4:104358558-104358559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs58939958	chr4:104358569-104358570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs111439615	chr4:104358577-104358578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201651549	chr4:104358599-104358600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532521887	chr4:104358600-104358601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569333895	chr4:104358601-104358602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs199944165	chr4:104358604-104358605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114118618	chr4:104358613-104358614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201574352	chr4:104358621-104358622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs182887204	chr4:104358628-104358629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs199759566	chr4:104358633-104358634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs7439936	chr4:104358637-104358638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs59872806	chr4:104358638-104358639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs60971479	chr4:104358642-104358643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546083984	chr4:104358643-104358644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs540472058	chr4:104358651-104358652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71600289	chr4:104358654-104358655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368019116	chr4:104358655-104358656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs70941659	chr4:104358659-104358660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs56888940	chr4:104358664-104358665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs58610358	chr4:104358669-104358670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570433320	chr4:104358672-104358673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370597659	chr4:104358673-104358674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555748206	chr4:104358676-104358677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
myeloid cancer	21057493	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104356800-104359400	Weak transcription	Liver	Liver
2	chr4:104359400-104360200	Strong transcription	Liver	Liver

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