Variant report

Variant	esv3380837
Chromosome Location	chr11:92676849-92682534
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 245 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:245 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113199087	chr11:92676854-92676855	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs538042368	chr11:92676871-92676872	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs556834286	chr11:92676875-92676876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs575006464	chr11:92676876-92676877	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377224304	chr11:92676884-92676885	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542611614	chr11:92676907-92676908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs71473498	chr11:92676922-92676923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71473499	chr11:92676939-92676940	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374645300	chr11:92677019-92677020	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148371905	chr11:92677039-92677040	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs539986522	chr11:92677065-92677066	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190764305	chr11:92677081-92677082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs141535498	chr11:92677118-92677119	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181006333	chr11:92677126-92677127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187124818	chr11:92677129-92677130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529898552	chr11:92677212-92677213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs548569774	chr11:92677217-92677218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190947361	chr11:92677250-92677251	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574002411	chr11:92677272-92677273	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371521421	chr11:92677276-92677277	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527680742	chr11:92677334-92677335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs57031461	chr11:92677344-92677345	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs397961378	chr11:92677350-92677351	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199839982	chr11:92677376-92677377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150871016	chr11:92677460-92677461	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182775032	chr11:92677464-92677465	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538457961	chr11:92677480-92677481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs556436999	chr11:92677527-92677528	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187365125	chr11:92677531-92677532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs190669417	chr11:92677565-92677566	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10047478	chr11:92677598-92677599	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11020111	chr11:92677605-92677606	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554042821	chr11:92677635-92677636	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572535403	chr11:92677659-92677660	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs539825578	chr11:92677672-92677673	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs2121651	chr11:92677698-92677699	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs569420943	chr11:92677706-92677707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576835708	chr11:92677711-92677712	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544397603	chr11:92677801-92677802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113823563	chr11:92677847-92677848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553478950	chr11:92677855-92677856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs562500644	chr11:92677888-92677889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529887319	chr11:92677910-92677911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201277261	chr11:92677994-92677995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs142826941	chr11:92678000-92678001	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs369183503	chr11:92678027-92678028	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs560462327	chr11:92678038-92678039	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs182997599	chr11:92678100-92678101	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs552579602	chr11:92678150-92678151	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs564578051	chr11:92678152-92678153	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Breast cancer	17133270	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Autism	19546859	CNVD
Fragile x	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92675600-92679000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:92675600-92688600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:92676400-92681600	Weak transcription	Placenta	Placenta
4	chr11:92678000-92678200	Enhancers	Stomach Mucosa	stomach
5	chr11:92678200-92680600	Weak transcription	Stomach Mucosa	stomach
6	chr11:92680200-92681000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:92680400-92680800	Enhancers	A549	lung
8	chr11:92680600-92680800	Enhancers	Stomach Mucosa	stomach
9	chr11:92680600-92681200	Enhancers	Liver	Liver
10	chr11:92680800-92681200	Weak transcription	A549	lung
11	chr11:92680800-92681600	Weak transcription	Stomach Mucosa	stomach
12	chr11:92680800-92682200	Enhancers	HepG2	liver
13	chr11:92681000-92681800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:92681200-92681400	Active TSS	Liver	Liver
15	chr11:92681200-92681800	Active TSS	A549	lung
16	chr11:92681200-92682400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:92681400-92681600	Enhancers	Liver	Liver
18	chr11:92681400-92682000	Enhancers	Pancreas	Pancrea
19	chr11:92681600-92681800	Flanking Active TSS	Liver	Liver
20	chr11:92681600-92682000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:92681600-92682400	Enhancers	Stomach Mucosa	stomach
22	chr11:92681600-92684000	Enhancers	Placenta	Placenta
23	chr11:92681800-92682000	Flanking Active TSS	A549	lung
24	chr11:92681800-92682400	Enhancers	Liver	Liver
25	chr11:92681800-92682400	Enhancers	Gastric	stomach
26	chr11:92682000-92685000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links