Variant report

Variant	esv3380896
Chromosome Location	chr7:136658280-136658477
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113465557	chr7:136658286-136658287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549410987	chr7:136658289-136658290	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113787700	chr7:136658320-136658321	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs324609	chr7:136658353-136658354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs563202188	chr7:136658379-136658380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200028602	chr7:136658380-136658381	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191003144	chr7:136658381-136658382	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs324610	chr7:136658388-136658389	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs324611	chr7:136658415-136658416	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs28373267	chr7:136658437-136658438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72254520	chr7:136658443-136658444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs28625563	chr7:136658444-136658445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs28492835	chr7:136658451-136658452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Melanoma	19188590	CNVD
Glioblastoma multiforme	18628472	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant melanoma	17260012	CNVD
Coffin-Siris syndrome	21572526	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	16272173	CNVD
Myxofibrosarcoma	16751306	CNVD
Stuttering	21108403	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Neuroticism	17667963	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute myeloid leukemia	17237825	CNVD
Esophageal cancer	21851588	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136653200-136660400	Weak transcription	Fetal Heart	heart
2	chr7:136657200-136659000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:136657200-136661600	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:136657400-136661400	Weak transcription	Fetal Stomach	stomach
5	chr7:136658000-136658400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136658400-136661200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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