Variant report

Variant	esv3381470
Chromosome Location	chr3:145098462-145102060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145089993..145092059-chr3:145098025..145100330,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC107021.1-9	chr3:145093215-145098582	NONHSAT092537

Extended variants
information (count: 113 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193039941	chr3:145098467-145098468	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs345050	chr3:145098473-145098474	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs558800786	chr3:145098480-145098481	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs577167427	chr3:145098500-145098501	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs544193020	chr3:145098554-145098555	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs562862773	chr3:145098557-145098558	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs574746452	chr3:145098572-145098573	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs185733981	chr3:145098601-145098602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs560399215	chr3:145098676-145098677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148590894	chr3:145098678-145098679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552447050	chr3:145098695-145098696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs564362330	chr3:145098735-145098736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531595168	chr3:145098740-145098741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376440871	chr3:145098863-145098864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs345051	chr3:145098900-145098901	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs374322274	chr3:145098908-145098909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568018055	chr3:145098975-145098976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535117825	chr3:145099015-145099016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs547450659	chr3:145099084-145099085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs345052	chr3:145099127-145099128	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs534125488	chr3:145099166-145099167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs116635002	chr3:145099173-145099174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577035740	chr3:145099197-145099198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538105209	chr3:145099198-145099199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs142952205	chr3:145099204-145099205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574743005	chr3:145099241-145099242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541893390	chr3:145099242-145099243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs80023432	chr3:145099265-145099266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs576198491	chr3:145099297-145099298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs572613139	chr3:145099349-145099350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs546329264	chr3:145099378-145099379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs564225410	chr3:145099455-145099456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs531558275	chr3:145099472-145099473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543665339	chr3:145099517-145099518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561866519	chr3:145099673-145099674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542341610	chr3:145099694-145099695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536814329	chr3:145099715-145099716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547121156	chr3:145099764-145099765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs34384665	chr3:145099769-145099770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs63231860	chr3:145099770-145099771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565761705	chr3:145099772-145099773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77609181	chr3:145099805-145099806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200556411	chr3:145099837-145099838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs189961639	chr3:145099890-145099891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11927982	chr3:145099951-145099952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs139447867	chr3:145100023-145100024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182189718	chr3:145100027-145100028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113788705	chr3:145100032-145100033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs183907805	chr3:145100038-145100039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568688640	chr3:145100061-145100062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autism	21956041	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145093000-145106200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:145101200-145101800	Active TSS	Stomach Smooth Muscle	stomach
3	chr3:145101800-145102000	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links