Variant report
| Variant | esv3382399 |
|---|---|
| Chromosome Location | chr10:26362156-26362662 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs71489895 | chr10:26362217-26362218 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs545693778 | chr10:26362224-26362225 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs386742105 | chr10:26362226-26362227 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs12263885 | chr10:26362228-26362229 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs187409927 | chr10:26362252-26362253 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs66657341 | chr10:26362271-26362272 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs191474808 | chr10:26362286-26362287 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs183730370 | chr10:26362290-26362291 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs560308645 | chr10:26362296-26362297 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs532263218 | chr10:26362312-26362313 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs373100767 | chr10:26362325-26362326 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs67216996 | chr10:26362326-26362327 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs186286104 | chr10:26362341-26362342 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs111931857 | chr10:26362359-26362360 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs557084597 | chr10:26362370-26362371 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs547861062 | chr10:26362375-26362376 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs138123156 | chr10:26362389-26362390 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs577072154 | chr10:26362457-26362458 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs61840796 | chr10:26362470-26362471 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 20 | rs142186082 | chr10:26362472-26362473 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs140851616 | chr10:26362516-26362517 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs71401875 | chr10:26362530-26362531 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs201508010 | chr10:26362574-26362575 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs370262722 | chr10:26362585-26362586 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs199834924 | chr10:26362592-26362593 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs200479725 | chr10:26362593-26362594 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs377556647 | chr10:26362596-26362597 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs61840797 | chr10:26362611-26362612 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:43)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26358600-26362400 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr10:26362400-26368000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
