Variant report

Variant	esv3383645
Chromosome Location	chr9:94345504-94345812
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94345770..94347286-chr9:94349788..94351847,2	K562	blood:
2	chr9:94344767..94346674-chr9:94347137..94349158,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577762401	chr9:94345509-94345510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs544932873	chr9:94345512-94345513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560000186	chr9:94345515-94345516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192642827	chr9:94345545-94345546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542584530	chr9:94345548-94345549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs561230558	chr9:94345557-94345558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs531789878	chr9:94345563-94345564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549997210	chr9:94345568-94345569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571857760	chr9:94345574-94345575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532731037	chr9:94345585-94345586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs10991998	chr9:94345617-94345618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs147072587	chr9:94345627-94345628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs57439383	chr9:94345633-94345634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs555353229	chr9:94345636-94345637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs57642885	chr9:94345637-94345638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113061386	chr9:94345641-94345642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs111820753	chr9:94345653-94345654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs371590551	chr9:94345699-94345700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs369858664	chr9:94345712-94345713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs13300380	chr9:94345785-94345786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs555967715	chr9:94345787-94345788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs61667734	chr9:94345789-94345790	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs9721908	chr9:94345796-94345797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9722277	chr9:94345797-94345798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145932520	chr9:94345801-94345802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553673360	chr9:94345804-94345805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94335600-94347000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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