Variant report

Variant	esv3384187
Chromosome Location	chr6:58777609-58778334
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:107)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:107 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr17:57928094..57930742-chr6:58776120..58778676,4	MCF-7	breast:
2	chr6:58772143..58775007-chr6:58776713..58778919,5	K562	blood:
3	chr20:52238301..52240090-chr6:58777406..58779226,2	MCF-7	breast:
4	chr1:144533667..144534206-chr6:58778266..58778827,2	Hela-S3	cervix:
5	chr6:58777751..58780199-chr8:128748477..128750306,2	MCF-7	breast:
6	chr6:27805995..27806602-chr6:58778107..58778767,2	MCF-7	breast:
7	chr17:57930610..57932922-chr6:58777438..58780644,3	MCF-7	breast:
8	chr6:58775076..58778073-chr8:103250732..103252303,2	K562	blood:
9	chr20:19348440..19350405-chr6:58776310..58778887,2	MCF-7	breast:
10	chr20:52560026..52560620-chr6:58777219..58777738,2	MCF-7	breast:
11	chr11:75291642..75294590-chr6:58777397..58779135,2	MCF-7	breast:
12	chr12:38031932..38033432-chr6:58775709..58777615,2	MCF-7	breast:
13	chr14:77757334..77757890-chr6:58776828..58777663,2	MCF-7	breast:
14	chr3:90450072..90451589-chr6:58776092..58777719,4	MCF-7	breast:
15	chr6:31849956..31851616-chr6:58776203..58778751,2	MCF-7	breast:
16	chr6:49499719..49500373-chr6:58777827..58778441,2	MCF-7	breast:
17	chr11:58677524..58679024-chr6:58777164..58778728,2	K562	blood:
18	chr17:59487756..59489295-chr6:58776969..58779008,2	MCF-7	breast:
19	chr2:38304500..38306516-chr6:58776846..58778352,2	MCF-7	breast:
20	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
21	chr11:58678524..58679504-chr6:58777166..58777745,2	MCF-7	breast:
22	chr12:117585721..117587663-chr6:58775712..58777632,2	MCF-7	breast:
23	chr20:60960325..60962671-chr6:58777619..58780127,2	MCF-7	breast:
24	chr3:195577616..195578367-chr6:58777226..58778078,2	MCF-7	breast:
25	chr17:57918618..57920889-chr6:58777178..58778919,2	MCF-7	breast:
26	chr6:58778243..58779030-chrX:61731310..61731811,2	MCF-7	breast:
27	chr3:62439844..62440394-chr6:58777335..58777888,2	MCF-7	breast:
28	chr6:58776637..58777632-chr8:18871298..18871912,2	HCT-116	colon:
29	chr1:9910788..9913768-chr6:58778329..58780695,2	MCF-7	breast:
30	chr16:73430630..73432387-chr6:58777761..58779339,2	MCF-7	breast:
31	chr20:17516282..17517977-chr6:58775914..58778767,2	MCF-7	breast:
32	chr1:216349276..216351630-chr6:58776732..58778763,2	MCF-7	breast:
33	chr12:38031911..38033432-chr6:58776341..58779018,2	MCF-7	breast:
34	chr18:55334307..55335255-chr6:58777372..58777917,2	MCF-7	breast:
35	chr6:58776722..58778356-chr8:48323824..48325324,2	MCF-7	breast:
36	chr6:31782546..31783397-chr6:58777144..58777897,2	Hela-S3	cervix:
37	chr21:35272607..35275458-chr6:58776178..58778758,2	MCF-7	breast:
38	chr11:58678524..58679504-chr6:58776958..58777672,3	MCF-7	breast:
39	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
40	chr6:30581365..30583375-chr6:58776545..58779152,2	MCF-7	breast:
41	chr20:52815826..52816411-chr6:58777180..58778164,2	MCF-7	breast:
42	chr20:60877312..60877975-chr6:58777171..58777835,2	MCF-7	breast:
43	chr22:32301912..32302764-chr6:58776740..58777661,2	MCF-7	breast:
44	chr13:20943879..20946266-chr6:58777671..58779217,2	MCF-7	breast:
45	chr17:73716896..73718915-chr6:58776651..58778729,2	MCF-7	breast:
46	chr20:62493089..62495109-chr6:58777340..58778920,2	MCF-7	breast:
47	chr6:58777993..58779849-chr8:94211437..94213575,2	MCF-7	breast:
48	chr3:16360548..16361058-chr6:58778316..58779058,2	MCF-7	breast:
49	chr20:19633644..19634334-chr6:58777686..58778513,2	MCF-7	breast:
50	chr3:90450069..90451571-chr6:58776178..58778913,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160325	chromatin interactions
ENSG00000103528	chromatin interactions
ENSG00000199004	chromatin interactions
ENSG00000159202	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000204389	chromatin interactions
ENSG00000185650	chromatin interactions
ENSG00000104524	chromatin interactions
ENSG00000267280	chromatin interactions
ENSG00000237080	chromatin interactions
ENSG00000248278	chromatin interactions
ENSG00000233822	chromatin interactions
ENSG00000230513	chromatin interactions
ENSG00000134905	chromatin interactions
ENSG00000132470	chromatin interactions
ENSG00000207713	chromatin interactions
ENSG00000255326	chromatin interactions
ENSG00000048392	chromatin interactions
ENSG00000187013	chromatin interactions
ENSG00000257084	chromatin interactions
ENSG00000112306	chromatin interactions
ENSG00000126749	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000075624	chromatin interactions
ENSG00000246263	chromatin interactions
ENSG00000183665	chromatin interactions
ENSG00000175866	chromatin interactions
ENSG00000065135	chromatin interactions
ENSG00000206754	chromatin interactions
ENSG00000089351	chromatin interactions
ENSG00000136997	chromatin interactions
ENSG00000204390	chromatin interactions
ENSG00000268858	chromatin interactions
ENSG00000141367	chromatin interactions
ENSG00000184436	chromatin interactions
ENSG00000201699	chromatin interactions
ENSG00000163635	chromatin interactions
ENSG00000009830	chromatin interactions
ENSG00000026103	chromatin interactions
ENSG00000160973	chromatin interactions
ENSG00000111321	chromatin interactions
ENSG00000207708	chromatin interactions
ENSG00000226137	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000124151	chromatin interactions
ENSG00000171858	chromatin interactions
ENSG00000185158	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000203813	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000184348	chromatin interactions

Extended variants
information (count: 372 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:372 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9500536	chr6:58777609-58777610	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
2	rs55658432	chr6:58777610-58777611	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
3	rs57648018	chr6:58777611-58777612	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
4	rs28818487	chr6:58777623-58777624	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
5	rs9500537	chr6:58777624-58777625	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
6	rs9404845	chr6:58777626-58777627	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
7	rs9500538	chr6:58777628-58777629	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
8	rs12190500	chr6:58777630-58777631	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
9	rs7748277	chr6:58777631-58777632	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
10	rs61435441	chr6:58777632-58777633	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
11	rs9404669	chr6:58777634-58777635	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
12	rs113688060	chr6:58777635-58777636	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
13	rs4579382	chr6:58777636-58777637	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
14	rs9377774	chr6:58777637-58777638	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
15	rs9500540	chr6:58777638-58777639	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
16	rs4928606	chr6:58777639-58777640	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
17	rs57851055	chr6:58777640-58777641	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
18	rs12212052	chr6:58777641-58777642	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
19	rs56903989	chr6:58777642-58777643	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
20	rs9378026	chr6:58777643-58777644	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
21	rs4374847	chr6:58777644-58777645	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
22	rs4928374	chr6:58777645-58777646	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
23	rs10452668	chr6:58777648-58777649	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
24	rs28847362	chr6:58777649-58777650	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
25	rs28839006	chr6:58777651-58777652	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
26	rs4928375	chr6:58777652-58777653	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
27	rs56044077	chr6:58777654-58777655	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
28	rs9378027	chr6:58777655-58777656	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
29	rs12110496	chr6:58777656-58777657	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
30	rs4598113	chr6:58777657-58777658	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
31	rs9500542	chr6:58777658-58777659	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
32	rs28794290	chr6:58777659-58777660	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
33	rs28801522	chr6:58777660-58777661	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
34	rs28868701	chr6:58777662-58777663	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	46 gene(s)	Overlapped CNVs	n/a
35	rs4305750	chr6:58777663-58777664	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	45 gene(s)	Overlapped CNVs	n/a
36	rs28809520	chr6:58777664-58777665	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
37	rs4374848	chr6:58777666-58777667	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
38	rs12213041	chr6:58777667-58777668	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
39	rs4928376	chr6:58777670-58777671	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
40	rs4928607	chr6:58777671-58777672	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
41	rs9377775	chr6:58777672-58777673	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
42	rs9500543	chr6:58777673-58777674	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
43	rs4928608	chr6:58777675-58777676	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
44	rs56024329	chr6:58777678-58777679	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
45	rs9404849	chr6:58777679-58777680	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
46	rs28848497	chr6:58777680-58777681	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
47	rs9404673	chr6:58777681-58777682	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
48	rs9391481	chr6:58777682-58777683	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
49	rs28880091	chr6:58777684-58777685	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
50	rs4388320	chr6:58777685-58777686	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
9	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
10	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
11	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
12	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr6:58776200-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:58776400-58778200	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr6:58776400-58779200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:58776400-58779400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
24	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
26	chr6:58776400-58779400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
28	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
29	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
30	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
31	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
32	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
33	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
34	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
35	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
36	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Dnd41	blood
37	chr6:58776600-58778000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:58776600-58778000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
39	chr6:58776600-58778400	ZNF genes & repeats	Esophagus	oesophagus
40	chr6:58776600-58778800	Bivalent/Poised TSS	K562	blood
41	chr6:58776600-58779200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:58776600-58779200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr6:58776600-58779200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:58776600-58779200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Male	brain
49	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Female	brain
50	chr6:58776600-58779200	ZNF genes & repeats	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links