Variant report

Variant	esv3384707
Chromosome Location	chr10:1148051-1148221
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1146970..1148515-chr10:1164276..1166796,2	K562	blood:
2	chr10:1146983..1148667-chr10:1149207..1150735,2	MCF-7	breast:
3	chr10:1142128..1144717-chr10:1147647..1149769,2	K562	blood:
4	chr10:1143924..1146120-chr10:1147738..1149529,2	K562	blood:
5	chr10:1146146..1148647-chr10:1193400..1195645,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTPBP4-7	chr10:1147572-1149291	NONHSAT010902

Extended variants
information (count: 37 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs59274891	chr10:1148052-1148053	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs201339630	chr10:1148054-1148055	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs60957896	chr10:1148058-1148059	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573628087	chr10:1148061-1148062	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs58565934	chr10:1148065-1148066	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs60408571	chr10:1148070-1148071	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs541795748	chr10:1148074-1148075	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs562127411	chr10:1148075-1148076	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs527742293	chr10:1148077-1148078	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs181523705	chr10:1148078-1148079	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs61431471	chr10:1148087-1148088	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs57765357	chr10:1148093-1148094	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs57861209	chr10:1148106-1148107	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs57796614	chr10:1148113-1148114	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs56902895	chr10:1148116-1148117	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs564467789	chr10:1148117-1148118	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs58938059	chr10:1148122-1148123	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs533556491	chr10:1148126-1148127	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs57460975	chr10:1148129-1148130	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs550430494	chr10:1148133-1148134	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs61542246	chr10:1148134-1148135	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs58930578	chr10:1148143-1148144	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs57727884	chr10:1148146-1148147	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs570340546	chr10:1148149-1148150	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs61062466	chr10:1148153-1148154	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs11818314	chr10:1148157-1148158	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs548960008	chr10:1148161-1148162	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs7910862	chr10:1148168-1148169	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs140934823	chr10:1148170-1148171	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs186652680	chr10:1148172-1148173	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs60704696	chr10:1148177-1148178	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs571291809	chr10:1148182-1148183	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs536831419	chr10:1148193-1148194	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs531689760	chr10:1148198-1148199	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs544222151	chr10:1148201-1148202	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs556748209	chr10:1148218-1148219	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs375306912	chr10:1148219-1148220	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD

Chromatin state (count:136 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:1118000-1156400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:1118000-1168400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:1121400-1154400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:1122200-1168400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:1122600-1168800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:1123000-1168600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:1123200-1155200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:1123200-1155800	Strong transcription	Dnd41	blood
11	chr10:1123200-1178400	Strong transcription	Liver	Liver
12	chr10:1123400-1155400	Strong transcription	Placenta	Placenta
13	chr10:1123400-1177800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:1123800-1155600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:1123800-1156000	Strong transcription	Primary T cells from cord blood	blood
16	chr10:1124200-1178000	Strong transcription	Primary B cells from cord blood	blood
17	chr10:1124400-1155800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:1127800-1148200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:1127800-1153000	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:1127800-1156200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:1127800-1179000	Strong transcription	Fetal Stomach	stomach
22	chr10:1128000-1155400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr10:1128000-1155400	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:1128000-1156400	Strong transcription	Fetal Intestine Small	intestine
25	chr10:1128200-1156200	Strong transcription	Fetal Intestine Large	intestine
26	chr10:1128200-1156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:1129400-1179000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:1130000-1155800	Strong transcription	NHEK	skin
29	chr10:1133000-1151200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:1133000-1155800	Weak transcription	A549	lung
31	chr10:1133200-1154400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:1135600-1148800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:1136000-1156400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:1137200-1149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:1138600-1155400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:1138600-1155800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:1138600-1162800	Strong transcription	Thymus	Thymus
38	chr10:1138600-1178600	Strong transcription	Adipose Nuclei	Adipose
39	chr10:1138800-1155400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:1138800-1159400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:1139000-1155400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:1139200-1148800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:1139200-1156400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr10:1139200-1157200	Strong transcription	Fetal Brain Female	brain
45	chr10:1139400-1153200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr10:1139600-1148200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:1139600-1148400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr10:1139600-1148600	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:1139600-1153200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr10:1139600-1155200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links