Variant report

Variant	esv3385165
Chromosome Location	chr7:101191003-101191167
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101188725..101191720-chr7:101195344..101197567,2	MCF-7	breast:
2	chr7:101180632..101182943-chr7:101190330..101192385,2	K562	blood:
3	chr7:101183184..101184839-chr7:101190313..101192262,2	K562	blood:
4	chr7:101191083..101193810-chr7:101458010..101459674,2	MCF-7	breast:
5	chr7:101190306..101193182-chr7:102036804..102038930,2	K562	blood:
6	chr7:101188789..101191725-chr7:102035301..102038260,2	MCF-7	breast:
7	chr7:101189298..101191997-chr7:101207833..101210314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	chromatin interactions
ENSG00000160963	chromatin interactions
ENSG00000128563	chromatin interactions

Extended variants
information (count: 17 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184355216	chr7:101191005-101191006	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs568099111	chr7:101191016-101191017	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs12113089	chr7:101191045-101191046	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs189656907	chr7:101191050-101191051	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs181313952	chr7:101191053-101191054	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs572923759	chr7:101191058-101191059	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs540226028	chr7:101191081-101191082	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs549782548	chr7:101191085-101191086	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs539216168	chr7:101191094-101191095	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs73712201	chr7:101191096-101191097	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs56040533	chr7:101191097-101191098	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs62465100	chr7:101191110-101191111	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs141799087	chr7:101191111-101191112	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs62465107	chr7:101191113-101191114	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs62465108	chr7:101191114-101191115	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs574531653	chr7:101191124-101191125	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs114809997	chr7:101191134-101191135	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101179200-101195000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:101181400-101194000	Weak transcription	Spleen	Spleen
3	chr7:101181600-101194000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:101182600-101194000	Weak transcription	HepG2	liver
5	chr7:101183000-101194000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:101186200-101199200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:101186200-101207600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:101186600-101206800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:101186800-101196400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:101187200-101197400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:101187800-101191600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:101188000-101197200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:101188200-101191600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:101188400-101192000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:101188600-101191800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr7:101189000-101193400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:101189200-101207600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:101190400-101191400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:101190600-101191600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:101190800-101191400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:101190800-101191800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:101190800-101191800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:101190800-101192800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:101190800-101193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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