Variant report

Variant	esv3385266
Chromosome Location	chr7:26501121-26501465
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX10-6	chr7:26501164-26501344	ucscGeneNc_uc003sxz_1

Extended variants
information (count: 17 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557913851	chr7:26501132-26501133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs573477973	chr7:26501135-26501136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs115815741	chr7:26501139-26501140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs375172749	chr7:26501157-26501158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs373639377	chr7:26501168-26501169	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs560014550	chr7:26501176-26501177	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs4722598	chr7:26501182-26501183	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs542204022	chr7:26501215-26501216	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs113818995	chr7:26501216-26501217	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs12532756	chr7:26501218-26501219	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs551022709	chr7:26501245-26501246	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs148100928	chr7:26501256-26501257	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs181689068	chr7:26501278-26501279	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs141269726	chr7:26501293-26501294	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs566861294	chr7:26501388-26501389	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186695383	chr7:26501404-26501405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs555795735	chr7:26501415-26501416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Cancer	21183584	CNVD
abnormal development	18461090	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Lung adenocarcinoma	17086460	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17086460	CNVD
Breast cancer	18852474	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26497400-26501600	Enhancers	Fetal Stomach	stomach
2	chr7:26498800-26501200	Enhancers	Fetal Muscle Leg	muscle
3	chr7:26498800-26501400	Enhancers	Pancreas	Pancrea
4	chr7:26499400-26501400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:26500200-26501200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr7:26500800-26501400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:26500800-26501400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:26501000-26501200	Enhancers	Fetal Muscle Trunk	muscle
9	chr7:26501200-26504600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:26501400-26503400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:26501400-26532000	Weak transcription	Pancreas	Pancrea

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