Variant report
| Variant | esv3386412 |
|---|---|
| Chromosome Location | chr12:104292623-104292982 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:104290617..104292950-chr12:104323409..104325905,2 | K562 | blood: | |
| 2 | chr12:104290265..104292950-chr12:104322949..104324909,2 | K562 | blood: | |
| 3 | chr12:104290392..104292773-chr12:104312666..104315584,2 | K562 | blood: | |
| 4 | chr12:104291534..104293159-chr12:104297953..104300433,2 | K562 | blood: | |
| 5 | chr12:104291172..104293021-chr12:104296690..104298441,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265072 | chromatin interactions |
| ENSG00000214198 | chromatin interactions |
| ENSG00000166598 | chromatin interactions |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs7298496 | chr12:104292647-104292648 | Weak transcription | Chromatin interactive region | 3 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs558103016 | chr12:104292669-104292670 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 3 | rs578019844 | chr12:104292711-104292712 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 4 | rs187041888 | chr12:104292724-104292725 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 5 | rs189794298 | chr12:104292772-104292773 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 6 | rs7298653 | chr12:104292773-104292774 | Weak transcription | Chromatin interactive region | 3 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs542362276 | chr12:104292842-104292843 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 8 | rs11608361 | chr12:104292848-104292849 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 9 | rs182043640 | chr12:104292872-104292873 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 10 | rs140006747 | chr12:104292890-104292891 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 11 | rs141978724 | chr12:104292894-104292895 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 12 | rs570892076 | chr12:104292953-104292954 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
| 13 | rs4964322 | chr12:104292960-104292961 | Weak transcription | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:65)
| Disease | PMID | Source |
|---|---|---|
| Esophageal cancer | 21851588 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Malaria | 21533027 | CNVD |
| Chronic lymphocytic leukemia | 22228453 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Chronic lymphocytic leukemia | 21670202 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cancer | 21637783 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Gastrointestinal stromal cancer | 20470368 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Melanoma | 18172304 | CNVD |
| Glioblastoma multiforme | 21390271 | CNVD |
| Cancer | 20164919 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Cancer | 16751803 | CNVD |
| Biliary cancer | 20360734 | CNVD |
| Breast cancer | 20360734 | CNVD |
| Coronary artery disease | 20360734 | CNVD |
| Crohn''s disease | 20360734 | CNVD |
| Hypertension | 20360734 | CNVD |
| Rheumatoid arthritis | 20360734 | CNVD |
| Type 1 diabetes | 20360734 | CNVD |
| Type 2 diabetes | 20360734 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Sudden cardiac death | 19188705 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Chronic lymphocytic leukemia | 21049055 | CNVD |
| Neurocytoma | 17123091 | CNVD |
| Gastrointestinal stromal cancer | 20877625 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:104284000-104299600 | Weak transcription | GM12878-XiMat | blood |
| 2 | chr12:104284600-104294200 | Weak transcription | Thymus | Thymus |
| 3 | chr12:104288400-104300000 | Weak transcription | Brain Hippocampus Middle | brain |
| 4 | chr12:104292200-104294200 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
