Variant report

Variant	esv3386417
Chromosome Location	chr12:63846683-63847257
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63842271..63844496-chr12:63846747..63849454,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113660535	chr12:63846742-63846743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs518961	chr12:63846743-63846744	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs11416903	chr12:63846769-63846770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs519038	chr12:63846770-63846771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs188449839	chr12:63846811-63846812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs367847292	chr12:63846848-63846849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs561678010	chr12:63846939-63846940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573490281	chr12:63846969-63846970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs542601612	chr12:63846980-63846981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs192275697	chr12:63847021-63847022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2700585	chr12:63847025-63847026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375901099	chr12:63847097-63847098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556111869	chr12:63847109-63847110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs576247512	chr12:63847123-63847124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs572008617	chr12:63847144-63847145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs5008210	chr12:63847146-63847147	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs150156234	chr12:63847147-63847148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs138639036	chr12:63847161-63847162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541334737	chr12:63847169-63847170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs575987659	chr12:63847183-63847184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533120001	chr12:63847198-63847199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs544955070	chr12:63847199-63847200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149574904	chr12:63847200-63847201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199851670	chr12:63847213-63847214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs5010835	chr12:63847223-63847224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs1313098	chr12:63847224-63847225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562531847	chr12:63847232-63847233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79028758	chr12:63847235-63847236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2015838	chr12:63847236-63847237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565144407	chr12:63847248-63847249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Leukemia	18628472	CNVD
Phyllodes tumor	17334353	CNVD
Glaucoma	21310917	CNVD
Breast cancer	16272173	CNVD
Mental retardation	19951919	CNVD
Glaucoma	21447600	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Developmental delay	21267005	CNVD
12q14 microdeletion syndrome	21267005	CNVD
Developmental delay	19277063	CNVD
Dwarfism	19277063	CNVD
Fibroblasts	20926602	CNVD
Metanephric adenoma	20802469	CNVD
Follicular lymphoma	18703704	CNVD
Acute myeloid leukemia	21251322	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Lung cancer	16773561	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17220210	CNVD
Osteopoikilosis	17220210	CNVD
short stature	17220210	CNVD
Burkitt''s lymphoma	20823134	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Ovarian neoplasms	16753589	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63840200-63851200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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