Variant report

Variant	esv3386526
Chromosome Location	chr19:22202261-22210059
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:22203510..22205947-chr19:22215522..22217797,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF208-1	chr19:22204886-22205086	ENSG00000269504.1
2	lnc-ZNF208-1	chr19:22210001-22210146	ENSG00000269504.1
3	lnc-ZNF208-1	chr19:22209038-22209147	ENSG00000269504.1
4	lnc-ZNF208-1	chr19:22208108-22209147	XLOC_013265
5	lnc-ZNF208-1	chr19:22210001-22210213	XLOC_013265
6	lnc-ZNF208-1	chr19:22205274-22205401	ENSG00000269504.1

No data

Extended variants
information (count: 56 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539846149	chr19:22204918-22204919	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs558091043	chr19:22205005-22205006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs576546762	chr19:22205008-22205009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs114971673	chr19:22205029-22205030	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs376790262	chr19:22205045-22205046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs181147389	chr19:22205047-22205048	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs186781125	chr19:22205055-22205056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs117305956	chr19:22205056-22205057	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs191631996	chr19:22205059-22205060	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs62112906	chr19:22205290-22205291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs568671926	chr19:22205305-22205306	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs535661372	chr19:22205347-22205348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs6511312	chr19:22205349-22205350	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs566043254	chr19:22205367-22205368	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs2359820	chr19:22208114-22208115	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs577591026	chr19:22208213-22208214	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs139372710	chr19:22208245-22208246	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs530067331	chr19:22208256-22208257	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs557415590	chr19:22208267-22208268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs575793838	chr19:22208285-22208286	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs543209276	chr19:22208309-22208310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs2359821	chr19:22208314-22208315	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs567241862	chr19:22208346-22208347	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs117130093	chr19:22208347-22208348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs112547058	chr19:22208350-22208351	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs372777201	chr19:22208362-22208363	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs532948147	chr19:22208404-22208405	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs67520962	chr19:22208533-22208534	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs2359822	chr19:22208534-22208535	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs2359823	chr19:22208536-22208537	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs2359824	chr19:22208538-22208539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs2359825	chr19:22208539-22208540	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs551237140	chr19:22208594-22208595	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs1985744	chr19:22208601-22208602	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs8106352	chr19:22208611-22208612	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs552496894	chr19:22208645-22208646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs567093394	chr19:22208690-22208691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs569126846	chr19:22208747-22208748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs2017962	chr19:22208751-22208752	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs558035757	chr19:22208752-22208753	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs546471849	chr19:22208760-22208761	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs141824143	chr19:22208885-22208886	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs528209826	chr19:22208934-22208935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs538644050	chr19:22208948-22208949	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs147110798	chr19:22208970-22208971	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs7253218	chr19:22208999-22209000	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs188117200	chr19:22209009-22209010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs555174640	chr19:22209030-22209031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs573460587	chr19:22209052-22209053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs555525655	chr19:22209060-22209061	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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