Variant report

Variant	esv3387143
Chromosome Location	chr10:97469344-97469843
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566443154	chr10:97469383-97469384	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs28445650	chr10:97469387-97469388	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs567319106	chr10:97469394-97469395	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs543627104	chr10:97469416-97469417	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs536459566	chr10:97469424-97469425	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs6584014	chr10:97469431-97469432	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs6584015	chr10:97469435-97469436	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs544600345	chr10:97469445-97469446	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs111624937	chr10:97469512-97469513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375529737	chr10:97469513-97469514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs144332729	chr10:97469520-97469521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs558170624	chr10:97469536-97469537	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10670966	chr10:97469538-97469539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183102261	chr10:97469561-97469562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs142662663	chr10:97469562-97469563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs540543463	chr10:97469568-97469569	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs186027687	chr10:97469573-97469574	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs201235689	chr10:97469647-97469648	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs150514024	chr10:97469649-97469650	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs34037152	chr10:97469653-97469654	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs118128004	chr10:97469655-97469656	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs527677453	chr10:97469656-97469657	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190930068	chr10:97469689-97469690	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551781974	chr10:97469699-97469700	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565305844	chr10:97469721-97469722	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182494007	chr10:97469730-97469731	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547336843	chr10:97469753-97469754	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372802327	chr10:97469806-97469807	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs7903181	chr10:97469811-97469812	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:97469200-97471600	Enhancers	Placenta	Placenta
3	chr10:97469400-97475600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:97469600-97469800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97469800-97470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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