Variant report

Variant	esv3387181
Chromosome Location	chr6:77571282-77594741
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77392645..77395103-chr6:77585280..77587587,2	MCF-7	breast:
2	chr6:77570038..77572103-chr6:77580616..77583020,2	MCF-7	breast:
3	chr6:77570038..77572103-chr6:77580616..77583020,2	MCF-7	breast:
4	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
5	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:
6	chr6:77407039..77407928-chr6:77570847..77571390,2	MCF-7	breast:
7	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
8	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
9	chr6:76641897..76642417-chr6:77570899..77571594,2	MCF-7	breast:
10	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
11	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:
12	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
13	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:
14	chr6:77406988..77407870-chr6:77586545..77587424,2	MCF-7	breast:
15	chr6:76985498..76986021-chr6:77586428..77587326,2	MCF-7	breast:
16	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:
17	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
18	chr6:77418110..77418947-chr6:77570902..77571718,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649

No data

Extended variants
information (count: 1008 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:1008 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548459296	chr6:77571294-77571295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs566600233	chr6:77571347-77571348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs76263463	chr6:77571360-77571361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189065606	chr6:77571416-77571417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs9350681	chr6:77571433-77571434	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs201004396	chr6:77571451-77571452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs534439204	chr6:77571488-77571489	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs140347450	chr6:77571510-77571511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs555883367	chr6:77571524-77571525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs7738521	chr6:77571634-77571635	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs563693043	chr6:77571651-77571652	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs541415489	chr6:77571665-77571666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs560103911	chr6:77571680-77571681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs76588411	chr6:77571727-77571728	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs7738429	chr6:77571778-77571779	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs565455794	chr6:77571797-77571798	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs73758011	chr6:77571840-77571841	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs7742422	chr6:77571842-77571843	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs191968461	chr6:77571875-77571876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs530211631	chr6:77571889-77571890	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs367916176	chr6:77571902-77571903	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs184572211	chr6:77571906-77571907	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs146591157	chr6:77571930-77571931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs73758012	chr6:77571939-77571940	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs552089945	chr6:77571961-77571962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs576683115	chr6:77571971-77571972	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12204609	chr6:77571973-77571974	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs80235657	chr6:77571989-77571990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs375735968	chr6:77572030-77572031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs376526638	chr6:77572041-77572042	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189340599	chr6:77572073-77572074	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs535553620	chr6:77572118-77572119	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs553461608	chr6:77572190-77572191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs572033864	chr6:77572197-77572198	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs531657353	chr6:77572235-77572236	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs540910558	chr6:77572294-77572295	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs143256112	chr6:77572316-77572317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs547609416	chr6:77572328-77572329	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs9352401	chr6:77572330-77572331	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs563080875	chr6:77572332-77572333	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs182485920	chr6:77572355-77572356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs527737213	chr6:77572400-77572401	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs530102327	chr6:77572401-77572402	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs148304307	chr6:77572437-77572438	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs552711278	chr6:77572438-77572439	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs116626734	chr6:77572547-77572548	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs552053534	chr6:77572570-77572571	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs368420581	chr6:77572591-77572592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs570369421	chr6:77572599-77572600	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs9447837	chr6:77572620-77572621	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77571000-77571400	Enhancers	Liver	Liver
2	chr6:77571200-77571600	Enhancers	Ovary	ovary
3	chr6:77571400-77571600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:77571600-77572200	Enhancers	Osteobl	bone
5	chr6:77571600-77573200	Weak transcription	Ovary	ovary
6	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:77572200-77573200	Weak transcription	Osteobl	bone
8	chr6:77572200-77573800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:77572600-77573000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:77573200-77573600	Enhancers	Osteobl	bone
11	chr6:77573200-77574600	Enhancers	Ovary	ovary
12	chr6:77573600-77575600	Weak transcription	Osteobl	bone
13	chr6:77573800-77575600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:77575600-77576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:77575600-77576200	Enhancers	Osteobl	bone
16	chr6:77575800-77576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:77576200-77576600	Weak transcription	Osteobl	bone
18	chr6:77576200-77576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:77576600-77577000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:77576600-77577200	Enhancers	Aorta	Aorta
21	chr6:77576600-77577400	Enhancers	Osteobl	bone
22	chr6:77576800-77577000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:77576800-77577200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:77576800-77577200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:77576800-77577400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:77578400-77585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:77584000-77585400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:77585000-77585400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
29	chr6:77585000-77585400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:77585000-77585400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
31	chr6:77585000-77585400	Enhancers	Pancreas	Pancrea
32	chr6:77585000-77585600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr6:77585000-77585600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:77585200-77585400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
35	chr6:77585200-77585600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:77585200-77585600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr6:77585200-77585600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr6:77585200-77585600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr6:77585200-77585600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
40	chr6:77585400-77586400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:77585400-77586600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:77585400-77586600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:77585400-77590800	Weak transcription	Pancreas	Pancrea
44	chr6:77585600-77586200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:77585600-77586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:77585600-77586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:77585600-77586200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:77585600-77586400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:77585600-77586400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:77586000-77586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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