Variant report

Variant	esv3387361
Chromosome Location	chr10:38971046-38975744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-2	chr10:38973919-38974323	NONHSAT012836
2	lnc-SEPT7L-2	chr10:38974088-38974323	NONHSAT012837

Extended variants
information (count: 49 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573686449	chr10:38973926-38973927	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs200696175	chr10:38973936-38973937	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs202015933	chr10:38973947-38973948	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs370621652	chr10:38973951-38973952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs369813529	chr10:38973957-38973958	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs4070237	chr10:38973963-38973964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs372884449	chr10:38973967-38973968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs7914116	chr10:38973977-38973978	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
9	rs4070236	chr10:38973980-38973981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs375254826	chr10:38973988-38973989	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs73252316	chr10:38973995-38973996	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs531037167	chr10:38974003-38974004	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs544485996	chr10:38974009-38974010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs564481211	chr10:38974018-38974019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs533151434	chr10:38974025-38974026	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs190205252	chr10:38974027-38974028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs202024359	chr10:38974030-38974031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs2310251	chr10:38974033-38974034	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs80145786	chr10:38974057-38974058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs2310250	chr10:38974058-38974059	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs12164770	chr10:38974072-38974073	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs11498482	chr10:38974081-38974082	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs566812694	chr10:38974082-38974083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs529405334	chr10:38974086-38974087	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs372433305	chr10:38974105-38974106	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs548877919	chr10:38974112-38974113	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs569053176	chr10:38974132-38974133	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs4070235	chr10:38974151-38974152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs538073974	chr10:38974154-38974155	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs558078238	chr10:38974160-38974161	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs571618694	chr10:38974165-38974166	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs11498483	chr10:38974177-38974178	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs375671832	chr10:38974180-38974181	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs553741739	chr10:38974200-38974201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs61840826	chr10:38974201-38974202	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs373111404	chr10:38974203-38974204	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs79172177	chr10:38974216-38974217	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs573624662	chr10:38974227-38974228	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs376698811	chr10:38974233-38974234	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs555873149	chr10:38974239-38974240	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs575422960	chr10:38974253-38974254	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs61840827	chr10:38974255-38974256	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs76724701	chr10:38974274-38974275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs61840828	chr10:38974277-38974278	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs61840829	chr10:38974279-38974280	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs544449154	chr10:38974290-38974291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs564392339	chr10:38974302-38974303	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs75361249	chr10:38974315-38974316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs533687020	chr10:38974322-38974323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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