Variant report

Variant	esv3387719
Chromosome Location	chr3:75796962-75804660
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:75804459..75806623-chr3:75811168..75814143,2	K562	blood:

Extended variants
information (count: 673 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:673 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76010778	chr3:75796979-75796980	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs76078954	chr3:75796984-75796985	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs75717059	chr3:75797000-75797001	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs148809410	chr3:75797003-75797004	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs201154592	chr3:75797021-75797022	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs137867588	chr3:75797022-75797023	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs202244049	chr3:75797027-75797028	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs79250028	chr3:75797037-75797038	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs201536434	chr3:75797066-75797067	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs199606967	chr3:75797076-75797077	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs200719808	chr3:75797104-75797105	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs57111152	chr3:75797137-75797138	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs199511795	chr3:75797161-75797162	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs370316909	chr3:75797163-75797164	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs200641739	chr3:75797185-75797186	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs201819034	chr3:75797194-75797195	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs200196546	chr3:75797221-75797222	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs369057347	chr3:75797263-75797264	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs371688854	chr3:75797264-75797265	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs375875707	chr3:75797273-75797274	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs200647739	chr3:75797278-75797279	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs201834919	chr3:75797296-75797297	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs199978763	chr3:75797319-75797320	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs377478625	chr3:75797326-75797327	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs200895284	chr3:75797342-75797343	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs112149056	chr3:75797353-75797354	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs368266958	chr3:75797363-75797364	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs115017243	chr3:75797364-75797365	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
29	rs374573145	chr3:75797367-75797368	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs3009091	chr3:75797394-75797395	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs368393382	chr3:75797412-75797413	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs202091988	chr3:75797524-75797525	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs200482456	chr3:75797525-75797526	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs62246617	chr3:75797545-75797546	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs201558255	chr3:75797550-75797551	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs202111198	chr3:75797639-75797640	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs375956272	chr3:75797652-75797653	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs113122652	chr3:75797699-75797700	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs112911844	chr3:75797704-75797705	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs112123767	chr3:75797777-75797778	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs113926561	chr3:75797799-75797800	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs62246618	chr3:75797863-75797864	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs139739933	chr3:75797911-75797912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs151262195	chr3:75797915-75797916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114408487	chr3:75797926-75797927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115095664	chr3:75797927-75797928	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs145604798	chr3:75797934-75797935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs114084574	chr3:75797936-75797937	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs115710947	chr3:75797948-75797949	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs115640043	chr3:75797951-75797952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Autism	22102821	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Prostate cancer	18632612	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Ovarian cancer	21720365	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21858162	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:146 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75765400-75811200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:75766200-75809000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr3:75771800-75804000	ZNF genes & repeats	Liver	Liver
4	chr3:75772800-75804000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr3:75784200-75797000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:75791200-75801000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:75794400-75798000	Weak transcription	Pancreas	Pancrea
8	chr3:75795000-75798000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:75795200-75798000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:75795600-75797800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:75795600-75797800	Weak transcription	Left Ventricle	heart
12	chr3:75795600-75798000	Weak transcription	Fetal Heart	heart
13	chr3:75795800-75798000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:75796200-75798000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:75796600-75797000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr3:75796800-75798200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:75796800-75832800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:75797000-75797800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:75797600-75800200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:75797600-75804000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr3:75797600-75804000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr3:75797600-75804000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr3:75797800-75799800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr3:75797800-75800200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:75797800-75800400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr3:75797800-75803000	ZNF genes & repeats	Colon Smooth Muscle	Colon
27	chr3:75797800-75803000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr3:75797800-75803200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:75797800-75803200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
30	chr3:75797800-75803200	ZNF genes & repeats	Left Ventricle	heart
31	chr3:75797800-75803200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
32	chr3:75797800-75803400	ZNF genes & repeats	Aorta	Aorta
33	chr3:75797800-75803800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr3:75798000-75798400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:75798000-75799000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:75798000-75799600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
37	chr3:75798000-75799800	ZNF genes & repeats	Fetal Brain Male	brain
38	chr3:75798000-75800200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:75798000-75800200	ZNF genes & repeats	Right Ventricle	heart
40	chr3:75798000-75802400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:75798000-75803000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:75798000-75803000	ZNF genes & repeats	Brain Anterior Caudate	brain
43	chr3:75798000-75803000	ZNF genes & repeats	Brain Hippocampus Middle	brain
44	chr3:75798000-75803000	ZNF genes & repeats	Gastric	stomach
45	chr3:75798000-75803200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:75798000-75803200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr3:75798000-75803200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
48	chr3:75798000-75803200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:75798000-75803200	ZNF genes & repeats	Brain Substantia Nigra	brain
50	chr3:75798000-75803200	ZNF genes & repeats	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links