Variant report

Variant	esv3387823
Chromosome Location	chr19:23265885-23590028
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2792)
CpG islands
(count:1774)
Chromatin interactive
region (count:33)
LncRNA
region (count:223)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2792 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:23578021-23578544	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:23582385-23582618	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:23577108-23577573	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:23456812-23457259	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:23445696-23446125	HepG2	liver:	n/a	n/a
6	ARID3A	chr19:23447039-23447307	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:23584631-23584918	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:23444247-23444991	HepG2	liver:	n/a	n/a
9	ARID3A	chr19:23464504-23464974	HepG2	liver:	n/a	n/a
10	ARID3A	chr19:23586013-23586771	HepG2	liver:	n/a	n/a
11	ARID3A	chr19:23446454-23446478	HepG2	liver:	n/a	n/a
12	ARID3A	chr19:23466709-23467067	HepG2	liver:	n/a	n/a
13	ARID3A	chr19:23456159-23456538	HepG2	liver:	n/a	n/a
14	ATF1	chr19:23447008-23447350	K562	blood:	n/a	n/a
15	ATF1	chr19:23433220-23433454	K562	blood:	n/a	n/a
16	ATF1	chr19:23446042-23446111	K562	blood:	n/a	n/a
17	ATF1	chr19:23578242-23578507	K562	blood:	n/a	n/a
18	ATF1	chr19:23495315-23495375	K562	blood:	n/a	n/a
19	ATF1	chr19:23281757-23282018	K562	blood:	n/a	n/a
20	ATF3	chr19:23366086-23366362	K562	blood:	n/a	n/a
21	BACH1	chr19:23487075-23487353	K562	blood:	n/a	chr19:23487225-23487239
22	BACH1	chr19:23299870-23300328	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr19:23487080-23487334	H1-hESC	embryonic stem cell:	n/a	chr19:23487225-23487239
24	BATF	chr19:23445759-23445944	GM12878	blood:	n/a	chr19:23445853-23445864
25	BATF	chr19:23445639-23446052	GM12878	blood:	n/a	chr19:23445853-23445864
26	BCL3	chr19:23444939-23445223	GM12878	blood:	n/a	n/a
27	BCLAF1	chr19:23432706-23433316	GM12878	blood:	n/a	chr19:23432778-23432791
28	BCLAF1	chr19:23577695-23578386	GM12878	blood:	n/a	chr19:23577863-23577876
29	BCLAF1	chr19:23577806-23578259	GM12878	blood:	n/a	chr19:23577863-23577876
30	BHLHE40	chr19:23456780-23457323	GM12878	blood:	n/a	n/a
31	BHLHE40	chr19:23465524-23465669	GM12878	blood:	n/a	n/a
32	BHLHE40	chr19:23456932-23457093	K562	blood:	n/a	n/a
33	BHLHE40	chr19:23432887-23433585	GM12878	blood:	n/a	n/a
34	BHLHE40	chr19:23456098-23456569	GM12878	blood:	n/a	n/a
35	BHLHE40	chr19:23578060-23578466	GM12878	blood:	n/a	n/a
36	BRCA1	chr19:23300598-23300786	H1-hESC	embryonic stem cell:	n/a	n/a
37	BRCA1	chr19:23444310-23444991	HepG2	liver:	n/a	n/a
38	BRCA1	chr19:23577414-23577648	H1-hESC	embryonic stem cell:	n/a	n/a
39	BRCA1	chr19:23577422-23577533	GM12878	blood:	n/a	n/a
40	BRCA1	chr19:23395180-23395185	GM12878	blood:	n/a	n/a
41	BRCA1	chr19:23577359-23578465	Hela-S3	cervix:	n/a	n/a
42	BRCA1	chr19:23456838-23457224	GM12878	blood:	n/a	n/a
43	BRCA1	chr19:23577365-23578276	HepG2	liver:	n/a	n/a
44	BRCA1	chr19:23456865-23457107	HepG2	liver:	n/a	n/a
45	BRCA1	chr19:23477057-23477096	GM12878	blood:	n/a	n/a
46	CBX3	chr19:23405791-23406025	K562	blood:	n/a	n/a
47	CCNT2	chr19:23281868-23282215	K562	blood:	n/a	n/a
48	CEBPB	chr19:23446897-23447304	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr19:23277815-23278762	IMR90	lung:	n/a	chr19:23278069-23278080
50	CEBPB	chr19:23282662-23283157	HepG2	liver:	n/a	n/a

(count:1774 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:23456588-23456638	GM12891	blood:	n/a
2	chr19:23385934-23385984	HCT-116	colon:	n/a
3	chr19:23300066-23300116	H1-hESC	embryonic stem cell:	embryo
4	chr19:23385934-23385984	SKMC	muscle:	n/a
5	chr19:23456790-23456840	GM12892	blood:	n/a
6	chr19:23456588-23456638	GM12891	blood:	n/a
7	chr19:23385934-23385984	HCT-116	colon:	n/a
8	chr19:23300066-23300116	H1-hESC	embryonic stem cell:	embryo
9	chr19:23385934-23385984	SKMC	muscle:	n/a
10	chr19:23456790-23456840	GM12892	blood:	n/a
11	chr19:23299649-23299699	HCPEpiC	choroid plexus:	n/a
12	chr19:23578063-23578113	HRE	kidney:	n/a
13	chr19:23300066-23300116	NHBE	bronchial:	n/a
14	chr19:23578377-23578427	PANC-1	pancreas:	n/a
15	chr19:23578241-23578291	MCF10A-Er-Src	breast:	n/a
16	chr19:23456790-23456840	HRE	kidney:	n/a
17	chr19:23385934-23385984	AG09309	skin:	n/a
18	chr19:23578377-23578427	HEEpiC	esophagus:	n/a
19	chr19:23433225-23433275	HCM	heart:	n/a
20	chr19:23386892-23386942	H1-hESC	embryonic stem cell:	embryo
21	chr19:23299889-23299939	AG04449	skin:	fetal
22	chr19:23386784-23386834	PFSK-1	brain:	n/a
23	chr19:23578365-23578415	AoSMC	blood vessel:	n/a
24	chr19:23457005-23457055	HRE	kidney:	n/a
25	chr19:23433225-23433275	NB4	blood:	n/a
26	chr19:23456575-23456625	HepG2	liver:	n/a
27	chr19:23390590-23390640	MCF10A-Er-Src	breast:	n/a
28	chr19:23386892-23386942	AG09319	gingival:	n/a
29	chr19:23454693-23454743	IMR90	lung:	fetal
30	chr19:23433225-23433275	BJ	skin:	n/a
31	chr19:23299649-23299699	PFSK-1	brain:	n/a
32	chr19:23541643-23541693	HMEC	breast:	n/a
33	chr19:23386892-23386942	ovcar-3	ovarian:	n/a
34	chr19:23300243-23300293	NHDF-neo	bronchial:	n/a
35	chr19:23578241-23578291	NHDF-neo	bronchial:	n/a
36	chr19:23299889-23299939	BE2_C	brain:	n/a
37	chr19:23299889-23299939	ProgFib	skin:	n/a
38	chr19:23578260-23578310	HCF	heart:	n/a
39	chr19:23457005-23457055	BJ	skin:	n/a
40	chr19:23578365-23578415	HCF	heart:	n/a
41	chr19:23387133-23387183	AG09309	skin:	n/a
42	chr19:23387068-23387118	HCF	heart:	n/a
43	chr19:23578679-23578729	AG04449	skin:	fetal
44	chr19:23541643-23541693	SK-N-MC	brain:	n/a
45	chr19:23299728-23299778	NHDF-neo	bronchial:	n/a
46	chr19:23299728-23299778	AG04449	skin:	fetal
47	chr19:23300243-23300293	Caco-2	colon:	n/a
48	chr19:23578365-23578415	HRE	kidney:	n/a
49	chr19:23386892-23386942	GM06990	blood:	n/a
50	chr19:23456588-23456638	RPTEC	kidney:	n/a

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:23443599..23446084-chr19:23455345..23457112,3	MCF-7	breast:
2	chr19:23298392..23301079-chr19:23302375..23304174,2	MCF-7	breast:
3	chr19:23426796..23428873-chr19:23431504..23434558,3	K562	blood:
4	chr19:23439080..23441693-chr19:23448189..23450377,2	MCF-7	breast:
5	chr19:23305214..23307140-chr19:23310499..23313073,2	MCF-7	breast:
6	chr19:23577154..23579229-chr19:23583278..23584951,2	MCF-7	breast:
7	chr19:23520093..23520713-chr21:9826403..9827051,2	MCF-7	breast:
8	chr19:23258209..23259774-chr19:23281850..23284587,2	MCF-7	breast:
9	chr19:23576348..23579660-chr19:23867719..23870587,3	MCF-7	breast:
10	chr19:23577656..23578478-chr19:49121947..49122666,2	NB4	blood:
11	chr19:23299713..23300295-chr19:24269911..24270643,3	Hela-S3	cervix:
12	chr19:23431827..23434798-chr19:23443635..23445528,2	MCF-7	breast:
13	chr13:91999526..92000349-chr19:23432834..23433455,2	NB4	blood:
14	chr19:23571146..23574036-chr19:23574733..23577243,2	K562	blood:
15	chr19:23256417..23259218-chr19:23299816..23301387,2	MCF-7	breast:
16	chr19:23564648..23566828-chr19:23577196..23579466,2	MCF-7	breast:
17	chr19:23433051..23435448-chr19:23455541..23457705,2	MCF-7	breast:
18	chr19:23574385..23576315-chr19:23576535..23579430,2	K562	blood:
19	chr19:23305214..23307140-chr19:23310499..23313073,2	MCF-7	breast:
20	chr19:23432656..23435103-chr19:23454271..23457071,2	MCF-7	breast:
21	chr19:23443599..23446084-chr19:23455345..23457112,3	MCF-7	breast:
22	chr17:56735011..56736549-chr19:23464937..23466566,2	MCF-7	breast:
23	chr19:23431827..23434798-chr19:23443635..23445528,2	MCF-7	breast:
24	chr19:23571146..23573840-chr19:23574386..23577614,3	K562	blood:
25	chr19:23426796..23428873-chr19:23431504..23433351,2	K562	blood:
26	chr19:23456110..23458063-chr19:23465875..23467770,2	MCF-7	breast:
27	chr19:23433051..23435448-chr19:23455541..23457705,2	MCF-7	breast:
28	chr19:23571146..23573840-chr19:23574386..23577614,3	K562	blood:
29	chr19:23432656..23435103-chr19:23454271..23457071,2	MCF-7	breast:
30	chr19:23571146..23574036-chr19:23574733..23577243,2	K562	blood:
31	chr19:23456603..23457127-chr19:24215859..24216611,4	MCF-7	breast:
32	chr19:23450360..23452680-chr19:23454564..23456528,2	MCF-7	breast:
33	chr19:23450360..23452680-chr19:23454564..23456528,2	MCF-7	breast:

(count:223 , 50 per page) page: 1 2 3 4 5

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF91-1	chr19:23585069-23585314	NONHSAT063911
2	lnc-ZNF91-1	chr19:23582038-23583849	NONHSAT063908
3	lnc-AC092329.1-1	chr19:23441500-23442918	NONHSAT063868
4	lnc-AC092329.1-2	chr19:23493350-23493434	XLOC_013275
5	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063868
6	lnc-AC092329.1-1	chr19:23452622-23452891	NONHSAT063877
7	lnc-AC092329.1-1	chr19:23453020-23453094	ENSG00000213971.3
8	lnc-ZNF730-2	chr19:23500840-23500868	XLOC_013020
9	lnc-ZNF91-1	chr19:23586008-23586295	ENSG00000269416.1
10	lnc-ZNF91-1	chr19:23586008-23586311	ENSG00000269416.1
11	lnc-AC092329.1-1	chr19:23452565-23453094	ENSG00000213971.3
12	lnc-AC092329.1-1	chr19:23453020-23453094	XLOC_013274
13	lnc-AC092329.1-1	chr19:23437855-23440741	NONHSAT063865
14	lnc-AC092329.1-1	chr19:23444422-23444546	ENSG00000213971.3
15	lnc-AC092329.1-2	chr19:23541635-23541782	NONHSAT063901
16	lnc-AC092329.1-2	chr19:23541232-23541619	NONHSAT063901
17	lnc-AC092329.1-1	chr19:23443666-23443736	XLOC_013274
18	lnc-AC092329.1-2	chr19:23493350-23493504	XLOC_013275
19	lnc-AC092329.1-1	chr19:23444157-23444546	ENSG00000213971.3
20	lnc-AC092329.1-2	chr19:23493350-23493434	XLOC_013275
21	lnc-ZNF91-1	chr19:23584979-23585314	ENSG00000269416.1
22	lnc-AC092329.1-2	chr19:23520633-23522939	NONHSAT063900
23	lnc-ZNF91-1	chr19:23588060-23588137	ENSG00000269416.1
24	lnc-ZNF730-6	chr19:23278065-23278503	NONHSAT063857
25	lnc-AC092329.1-2	chr19:23524972-23525067	NONHSAT063902
26	lnc-AC092329.1-1	chr19:23456878-23457050	ENSG00000213971.3
27	lnc-ZNF730-8	chr19:23419110-23419653	NONHSAT063864
28	lnc-ZNF724P-4	chr19:23305990-23306890	NONHSAT063861
29	lnc-ZNF91-1	chr19:23586008-23586311	ENSG00000269416.1
30	lnc-ZNF730-10	chr19:23471422-23472147	NONHSAT063883
31	lnc-ZNF91-1	chr19:23582041-23583849	ENSG00000246181
32	lnc-AC092329.1-1	chr19:23456878-23456998	ENSG00000213971.3
33	lnc-ZNF91-1	chr19:23586082-23586311	ENSG00000269416.1
34	lnc-ZNF91-1	chr19:23587753-23587910	NONHSAT063908
35	lnc-AC092329.1-2	chr19:23487801-23487933	NONHSAT063885
36	lnc-ZNF91-1	chr19:23588802-23588907	NONHSAT063908
37	lnc-ZNF91-1	chr19:23583786-23583849	ENSG00000269416.1
38	lnc-AC092329.1-2	chr19:23493350-23493472	NONHSAT063886
39	lnc-AC092329.1-1	chr19:23443666-23443736	XLOC_013274
40	lnc-AC092329.1-2	chr19:23493350-23493472	NONHSAT063894
41	lnc-ZNF730-1	chr19:23294625-23294867	XLOC_013018
42	lnc-ZNF91-1	chr19:23586522-23586549	ENSG00000269416.1
43	lnc-AC092329.1-1	chr19:23444422-23445436	ENSG00000213971.3
44	lnc-AC092329.1-1	chr19:23452622-23452736	XLOC_013274
45	lnc-AC092329.1-2	chr19:23493124-23493230	XLOC_013275
46	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063877
47	lnc-ZNF730-14	chr19:23586016-23586333	NONHSAT063915
48	lnc-AC092329.1-1	chr19:23452692-23453088	XLOC_013274
49	lnc-AC092329.1-1	chr19:23455421-23455525	ENSG00000213971.3
50	lnc-ZNF724P-3	chr19:23414969-23415095	NR_045525

No data

Variant related genes	Relation type
ENSG00000268105	TF binding region
ENSG00000268992	TF binding region
ENSG00000269837	TF binding region
ZNF724P	TF binding region
ENSG00000213971	TF binding region
ENSG00000221478	TF binding region
ENSG00000269431	TF binding region
ENSG00000269471	TF binding region
VN1R91P	TF binding region
ZNF730	TF binding region
VN1R90P	TF binding region
ENSG00000268469	TF binding region
SNX6P1	TF binding region
ZNF91	TF binding region
ENSG00000270479	TF binding region
ENSG00000269107	TF binding region
ENSG00000267934	TF binding region
ENSG00000268105	CpG island
ENSG00000268992	CpG island
ENSG00000269837	CpG island
ZNF724P	CpG island
ENSG00000213971	CpG island
ENSG00000221478	CpG island
ENSG00000269431	CpG island
ENSG00000269471	CpG island
VN1R91P	CpG island
ZNF730	CpG island
VN1R90P	CpG island
ENSG00000268469	CpG island
SNX6P1	CpG island
ZNF91	CpG island
ENSG00000270479	CpG island
ENSG00000269107	CpG island
ENSG00000267934	CpG island
ENSG00000183850	chromatin interactions
ENSG00000269837	chromatin interactions
ENSG00000267920	chromatin interactions
ENSG00000167232	chromatin interactions
ENSG00000270479	chromatin interactions
ENSG00000196081	chromatin interactions
ENSG00000213096	chromatin interactions
ENSG00000215417	chromatin interactions
ENSG00000197372	chromatin interactions
ENSG00000063177	chromatin interactions
ENSG00000063176	chromatin interactions
ENSG00000267886	chromatin interactions
ENSG00000213971	chromatin interactions
ENSG00000268362	chromatin interactions
HIATL1	miRNA target sites
HECTD2	miRNA target sites
TBC1D22B	miRNA target sites
ELK4	miRNA target sites
EIF1AX	miRNA target sites
NR3C2	miRNA target sites
GABRB3	miRNA target sites
TMEM30A	miRNA target sites
ARF3	miRNA target sites
TES	miRNA target sites
ALG9	miRNA target sites
NR4A1	miRNA target sites
NFIB	miRNA target sites
ELMO2	miRNA target sites
KIF16B	miRNA target sites
SOD2	miRNA target sites
EIF2C2	miRNA target sites
ARCN1	miRNA target sites
PLS3	miRNA target sites
ELK3	miRNA target sites
DNMBP	miRNA target sites
TNKS	miRNA target sites
FAM199X	miRNA target sites

Extended variants
information (count: 12663 )
Associated
traits (count: 47 )

Variant overlapped rSNPs/rCNVs (count:12663 , 50 per page) page: 1 2 3 4 5 6 7 ... 254

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143529922	chr19:23265895-23265896	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs144599233	chr19:23265935-23265936	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs558007766	chr19:23265948-23265949	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs576303521	chr19:23265955-23265956	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs537363537	chr19:23265972-23265973	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs188859933	chr19:23265999-23266000	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs372869466	chr19:23266000-23266001	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs147650984	chr19:23266009-23266010	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs373671194	chr19:23266078-23266079	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs112273359	chr19:23266111-23266112	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs541096126	chr19:23266113-23266114	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs142266966	chr19:23266178-23266179	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs193280437	chr19:23266272-23266273	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs146047513	chr19:23266301-23266302	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs563997945	chr19:23266325-23266326	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs375696075	chr19:23266359-23266360	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs551323142	chr19:23266372-23266373	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs541018274	chr19:23266397-23266398	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs542915514	chr19:23266399-23266400	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs560917119	chr19:23266431-23266432	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs77665784	chr19:23266432-23266433	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs546672112	chr19:23266447-23266448	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs571674685	chr19:23266474-23266475	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs2935454	chr19:23266475-23266476	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs533145176	chr19:23266492-23266493	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs113987305	chr19:23266514-23266515	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs368419233	chr19:23266537-23266538	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs569839062	chr19:23266554-23266555	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs536920898	chr19:23266581-23266582	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs184644909	chr19:23266599-23266600	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs140252524	chr19:23266631-23266632	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs532488349	chr19:23266718-23266719	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs567255642	chr19:23266776-23266777	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs534632700	chr19:23266778-23266779	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs73555468	chr19:23266781-23266782	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs188312591	chr19:23266824-23266825	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs150326917	chr19:23266860-23266861	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs557227023	chr19:23267034-23267035	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs571310780	chr19:23267065-23267066	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs180818694	chr19:23267077-23267078	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs183988332	chr19:23267080-23267081	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs561278740	chr19:23267120-23267121	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs528443803	chr19:23267149-23267150	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs534312434	chr19:23267172-23267173	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs61393434	chr19:23267180-23267181	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs78774988	chr19:23267196-23267197	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs565368630	chr19:23267220-23267221	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs565908332	chr19:23267235-23267236	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs532456630	chr19:23267270-23267271	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs189682615	chr19:23267308-23267309	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:47)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:6286 , 50 per page) page: 1 2 3 4 5 6 7 ... 126

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23258800-23287000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:23259000-23273800	Weak transcription	Ovary	ovary
3	chr19:23259000-23277800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:23259000-23280400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:23259200-23278000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr19:23259400-23266000	Weak transcription	HUVEC	blood vessel
7	chr19:23260000-23272200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr19:23261200-23266000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:23261400-23267400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:23261400-23267800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:23261400-23268000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr19:23261600-23276800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:23262000-23267400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr19:23262000-23268200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr19:23262200-23266000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:23262200-23266200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr19:23262400-23267000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr19:23262600-23266200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr19:23262800-23266200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:23262800-23266200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:23262800-23268000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:23262800-23268200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:23263200-23266600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr19:23263200-23268000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr19:23263200-23268200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:23263400-23266200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:23263400-23266600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr19:23263400-23268000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr19:23263600-23266200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:23263600-23268400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr19:23264000-23266400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr19:23264200-23266200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:23264200-23267800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr19:23264800-23269200	Weak transcription	Dnd41	blood
35	chr19:23264800-23273800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr19:23265000-23269200	Weak transcription	Fetal Kidney	kidney
37	chr19:23265000-23272000	Weak transcription	Fetal Lung	lung
38	chr19:23265200-23266200	ZNF genes & repeats	Thymus	Thymus
39	chr19:23265400-23266200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr19:23265400-23266200	ZNF genes & repeats	Fetal Stomach	stomach
41	chr19:23266000-23266200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:23266200-23267000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr19:23266200-23267400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr19:23266200-23267400	Weak transcription	Thymus	Thymus
45	chr19:23266200-23268400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:23266200-23268400	Weak transcription	Fetal Stomach	stomach
47	chr19:23266200-23273600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr19:23267000-23268000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr19:23267000-23268200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr19:23267400-23268200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links