Variant report

Variant	esv3387855
Chromosome Location	chr11:15371576-15376774
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15368518..15371257-chr11:15372733..15374518,2	MCF-7	breast:

Extended variants
information (count: 196 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:196 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574975327	chr11:15371603-15371604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs558942517	chr11:15371613-15371614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs185018459	chr11:15371615-15371616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12786289	chr11:15371682-15371683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12808687	chr11:15371683-15371684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs551665193	chr11:15371685-15371686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570366668	chr11:15371686-15371687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537243813	chr11:15371696-15371697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370421090	chr11:15371717-15371718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549580980	chr11:15371728-15371729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567638137	chr11:15371747-15371748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs535138221	chr11:15371763-15371764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553375194	chr11:15371777-15371778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs374070886	chr11:15371800-15371801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539705263	chr11:15371828-15371829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557760348	chr11:15371857-15371858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs576334801	chr11:15371867-15371868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543233214	chr11:15371873-15371874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549205495	chr11:15371875-15371876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561954979	chr11:15371939-15371940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs573622717	chr11:15371944-15371945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs189819158	chr11:15371956-15371957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558881020	chr11:15371961-15371962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs183847421	chr11:15371994-15371995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150672967	chr11:15372053-15372054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189212040	chr11:15372058-15372059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs531268992	chr11:15372113-15372114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549275967	chr11:15372127-15372128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567871019	chr11:15372139-15372140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535073202	chr11:15372142-15372143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547126103	chr11:15372170-15372171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571810737	chr11:15372234-15372235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200932976	chr11:15372283-15372284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs112630646	chr11:15372286-15372287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371168634	chr11:15372346-15372347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539033412	chr11:15372350-15372351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs557325313	chr11:15372351-15372352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs193105657	chr11:15372363-15372364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576244373	chr11:15372366-15372367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs4757307	chr11:15372386-15372387	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs183465994	chr11:15372395-15372396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187584258	chr11:15372400-15372401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs191735341	chr11:15372425-15372426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs552645099	chr11:15372436-15372437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7105245	chr11:15372466-15372467	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs184281390	chr11:15372474-15372475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs72861982	chr11:15372479-15372480	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs139861633	chr11:15372540-15372541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543309780	chr11:15372556-15372557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7104383	chr11:15372557-15372558	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Myelofibrosis	22110671	CNVD
Cancer	24489367	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Neuroblastoma	19435921	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21858162	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15364600-15386000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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