Variant report

Variant	esv3387966
Chromosome Location	chr10:95853012-95855010
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOC3L-3	chr10:95854431-95854542	ENSG00000232913.1
2	lnc-NOC3L-7	chr10:95854085-95854222	ucscGeneNc_uc001kjn_2

Extended variants
information (count: 66 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549943910	chr10:95853019-95853020	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs546672408	chr10:95853026-95853027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs370870836	chr10:95853145-95853146	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs376713318	chr10:95853208-95853209	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs11817381	chr10:95853267-95853268	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs542552613	chr10:95853286-95853287	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs534754888	chr10:95853296-95853297	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs139732762	chr10:95853314-95853315	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs371970563	chr10:95853347-95853348	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs569165157	chr10:95853367-95853368	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs538482004	chr10:95853414-95853415	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs191161202	chr10:95853477-95853478	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs540365725	chr10:95853502-95853503	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs143106333	chr10:95853539-95853540	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs553883168	chr10:95853582-95853583	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs551121380	chr10:95853587-95853588	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs34773151	chr10:95853686-95853687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs67845524	chr10:95853692-95853693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs78494785	chr10:95853693-95853694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs398046178	chr10:95853695-95853696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113478062	chr10:95853697-95853698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375708460	chr10:95853807-95853808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560158598	chr10:95853881-95853882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs573653798	chr10:95853888-95853889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546680554	chr10:95853890-95853891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556085405	chr10:95853933-95853934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376786291	chr10:95853940-95853941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182448842	chr10:95853951-95853952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564870060	chr10:95853990-95853991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527461674	chr10:95853991-95853992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113438895	chr10:95854000-95854001	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs562650333	chr10:95854017-95854018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs74151032	chr10:95854045-95854046	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs187179508	chr10:95854047-95854048	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs140041304	chr10:95854071-95854072	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs572311723	chr10:95854072-95854073	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs112008756	chr10:95854085-95854086	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs397770581	chr10:95854086-95854087	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs192046769	chr10:95854134-95854135	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs569229444	chr10:95854147-95854148	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs117504926	chr10:95854286-95854287	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs552090772	chr10:95854299-95854300	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547979215	chr10:95854324-95854325	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs115993953	chr10:95854328-95854329	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs534520406	chr10:95854336-95854337	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs538999792	chr10:95854353-95854354	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs373711560	chr10:95854415-95854416	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs567774042	chr10:95854420-95854421	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs567943625	chr10:95854421-95854422	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs536298230	chr10:95854430-95854431	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95836600-95861400	Weak transcription	Pancreas	Pancrea
3	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95845400-95860600	Weak transcription	Spleen	Spleen
7	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:95845600-95853400	Weak transcription	Lung	lung
9	chr10:95847800-95860600	Weak transcription	Fetal Intestine Small	intestine
10	chr10:95849000-95862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:95849000-95862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:95849200-95858600	Weak transcription	Fetal Brain Female	brain
13	chr10:95849200-95858600	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:95849200-95863200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:95850400-95863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:95850600-95854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:95850600-95854400	Weak transcription	Left Ventricle	heart
18	chr10:95850600-95858400	Weak transcription	Fetal Lung	lung
19	chr10:95850800-95857400	Weak transcription	Right Atrium	heart
20	chr10:95851200-95853200	Weak transcription	Ovary	ovary
21	chr10:95851200-95853400	Weak transcription	Aorta	Aorta
22	chr10:95851400-95853400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:95851400-95857800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:95851600-95854800	Weak transcription	Brain Anterior Caudate	brain
25	chr10:95851800-95854200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:95852200-95854200	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:95852400-95853600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:95852600-95853400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:95852600-95853600	Enhancers	HSMMtube	muscle
30	chr10:95852600-95853600	Enhancers	Osteobl	bone
31	chr10:95852800-95853200	Weak transcription	A549	lung
32	chr10:95852800-95853600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:95852800-95853600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:95852800-95853600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:95853000-95853200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:95853000-95853400	Enhancers	Adipose Nuclei	Adipose
37	chr10:95853000-95853600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:95853000-95853600	Enhancers	Fetal Stomach	stomach
39	chr10:95853000-95853600	Enhancers	HSMM	muscle
40	chr10:95853000-95853600	Enhancers	NH-A	brain
41	chr10:95853000-95854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:95853200-95853400	Enhancers	A549	lung
43	chr10:95853200-95853600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:95853200-95853600	Enhancers	Ovary	ovary
45	chr10:95853200-95853600	Enhancers	NHLF	lung
46	chr10:95853400-95853600	Enhancers	Aorta	Aorta
47	chr10:95853400-95853600	Enhancers	Lung	lung
48	chr10:95853400-95853600	Enhancers	Stomach Smooth Muscle	stomach
49	chr10:95853400-95856600	Weak transcription	A549	lung
50	chr10:95853400-95867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links