Variant report

Variant	esv3389271
Chromosome Location	chr20:26210751-26211086
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75078610	chr20:26210757-26210758	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs75499869	chr20:26210758-26210759	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs530615415	chr20:26210766-26210767	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs550229587	chr20:26210767-26210768	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs62198257	chr20:26210771-26210772	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
6	rs142836269	chr20:26210810-26210811	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs398121279	chr20:26210812-26210813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs79818738	chr20:26210815-26210816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs113074866	chr20:26210829-26210830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs73356233	chr20:26210878-26210879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs368803813	chr20:26210884-26210885	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs555362947	chr20:26210885-26210886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs60546378	chr20:26210907-26210908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs80328626	chr20:26210908-26210909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs376678738	chr20:26210909-26210910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs139759920	chr20:26210910-26210911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs368739879	chr20:26210912-26210913	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs371512979	chr20:26210913-26210914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs377380542	chr20:26210920-26210921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs141514194	chr20:26210925-26210926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs145957983	chr20:26210927-26210928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs375449272	chr20:26210930-26210931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs552697982	chr20:26210931-26210932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs370089733	chr20:26210932-26210933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs376783701	chr20:26210939-26210940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs371031948	chr20:26210941-26210942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs374022201	chr20:26210943-26210944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs371621939	chr20:26210950-26210951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs376573477	chr20:26210951-26210952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs67679733	chr20:26210953-26210954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs73904513	chr20:26210966-26210967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs529398273	chr20:26210971-26210972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs373852847	chr20:26210974-26210975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs368985412	chr20:26210975-26210976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs79899683	chr20:26210980-26210981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs372018802	chr20:26210985-26210986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs367658926	chr20:26210987-26210988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs74899267	chr20:26210988-26210989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs79378631	chr20:26210989-26210990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs372313878	chr20:26210991-26210992	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs148490096	chr20:26211021-26211022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs566352801	chr20:26211040-26211041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs73356235	chr20:26211043-26211044	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs534754392	chr20:26211052-26211053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs201531362	chr20:26211059-26211060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs551729646	chr20:26211062-26211063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs76399265	chr20:26211079-26211080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26200200-26214200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr20:26201800-26213400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr20:26207600-26214200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr20:26208600-26210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:26210000-26212000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:26210400-26212000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr20:26210800-26211400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:26211000-26211400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links