Variant report

Variant	esv3389523
Chromosome Location	chr10:22074995-22097153
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22082723..22085289-chr10:22087786..22090780,2	K562	blood:
2	chr10:22085974..22088935-chr10:22094084..22096288,4	K562	blood:
3	chr10:22079504..22081110-chr10:22086680..22089399,2	K562	blood:
4	chr10:22082358..22085289-chr10:22087786..22091076,3	K562	blood:
5	chr10:22079176..22082090-chr10:22084564..22087079,2	MCF-7	breast:
6	chr10:22076672..22080737-chr10:22081225..22085922,5	K562	blood:
7	chr10:22076672..22080737-chr10:22081225..22085922,5	K562	blood:
8	chr10:22079504..22081110-chr10:22086680..22089399,2	K562	blood:
9	chr10:22079176..22082090-chr10:22084564..22087079,2	MCF-7	breast:
10	chr10:22091609..22095145-chr10:22118874..22121607,3	K562	blood:
11	chr10:22074657..22076877-chr10:22078221..22080087,2	K562	blood:
12	chr10:22089631..22092137-chr10:22094287..22097261,4	K562	blood:
13	chr10:22086256..22088772-chr10:22096451..22099042,2	K562	blood:
14	chr10:21798661..21801415-chr10:22093331..22096294,2	K562	blood:
15	chr10:22082358..22085289-chr10:22087786..22091076,3	K562	blood:
16	chr10:22095782..22097515-chr10:22188651..22190331,2	K562	blood:
17	chr10:22094235..22096912-chr10:23343013..23344752,2	K562	blood:
18	chr10:22074657..22076877-chr10:22078221..22080087,2	K562	blood:
19	chr10:21385912..21388702-chr10:22094207..22095915,2	K562	blood:
20	chr10:22085974..22088935-chr10:22094084..22096288,4	K562	blood:
21	chr10:22086256..22088772-chr10:22096451..22099042,2	K562	blood:
22	chr10:21812518..21815054-chr10:22094822..22097668,3	K562	blood:
23	chr10:21785208..21787872-chr10:22095113..22097094,2	K562	blood:
24	chr10:22089631..22092137-chr10:22094287..22097261,4	K562	blood:
25	chr10:22082723..22085289-chr10:22087786..22090780,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204682	chromatin interactions
ENSG00000180592	chromatin interactions
ENSG00000222071	chromatin interactions

Extended variants
information (count: 693 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:693 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149332966	chr10:22075094-22075095	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs369660987	chr10:22075096-22075097	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186474590	chr10:22075126-22075127	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571303187	chr10:22075170-22075171	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs529425547	chr10:22075182-22075183	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548280527	chr10:22075183-22075184	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs536875703	chr10:22075192-22075193	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190565813	chr10:22075246-22075247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs573636448	chr10:22075331-22075332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542197496	chr10:22075341-22075342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35529170	chr10:22075347-22075348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559326004	chr10:22075357-22075358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557399807	chr10:22075384-22075385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs71472824	chr10:22075386-22075387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200369868	chr10:22075388-22075389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs71491185	chr10:22075390-22075391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs7908022	chr10:22075392-22075393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11012788	chr10:22075394-22075395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12245943	chr10:22075396-22075397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113652969	chr10:22075422-22075423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113252986	chr10:22075427-22075428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545354962	chr10:22075430-22075431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545800542	chr10:22075455-22075456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558819566	chr10:22075497-22075498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564430837	chr10:22075540-22075541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs114941003	chr10:22075541-22075542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372716396	chr10:22075542-22075543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs540075077	chr10:22075554-22075555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561459018	chr10:22075594-22075595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199976124	chr10:22075630-22075631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs530276633	chr10:22075631-22075632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370553184	chr10:22075643-22075644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs187876795	chr10:22075645-22075646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566415237	chr10:22075682-22075683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190845533	chr10:22075684-22075685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs528108659	chr10:22075738-22075739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551333695	chr10:22075904-22075905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571300168	chr10:22075914-22075915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530617398	chr10:22075927-22075928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs550217321	chr10:22075931-22075932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs36024813	chr10:22076044-22076045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs567124631	chr10:22076058-22076059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536013068	chr10:22076083-22076084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375884921	chr10:22076114-22076115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs375028908	chr10:22076129-22076130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs566745791	chr10:22076156-22076157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538687068	chr10:22076248-22076249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs144598283	chr10:22076252-22076253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs34529033	chr10:22076293-22076294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs56328322	chr10:22076307-22076308	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Prostate cancer	18632612	CNVD
Cancer	17699850	CNVD
Ovarian cancer	17699850	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:353 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22048000-22109000	Weak transcription	Ovary	ovary
2	chr10:22048400-22087400	Weak transcription	Aorta	Aorta
3	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
4	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:22048600-22076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:22048600-22076600	Weak transcription	Gastric	stomach
7	chr10:22048800-22079600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:22049000-22086400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:22054200-22076600	Weak transcription	Fetal Lung	lung
11	chr10:22055400-22095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:22061000-22077000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:22062200-22088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:22066000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:22067000-22078600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:22067200-22077200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr10:22067400-22079000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:22068400-22076400	Weak transcription	Fetal Stomach	stomach
19	chr10:22068400-22076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:22070800-22086800	Weak transcription	Primary B cells from cord blood	blood
21	chr10:22072000-22079400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:22072000-22086600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:22072000-22086600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:22072200-22078000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:22072800-22077400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:22072800-22082200	Weak transcription	Placenta	Placenta
27	chr10:22073000-22075400	Weak transcription	NH-A	brain
28	chr10:22073000-22086400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:22073200-22077800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:22073400-22076000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:22073400-22079400	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:22074000-22075000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:22074000-22075200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:22074000-22075200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:22074000-22075200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:22074000-22075200	Strong transcription	Liver	Liver
37	chr10:22074200-22105200	Weak transcription	Lung	lung
38	chr10:22074400-22076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:22074400-22078600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:22074400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:22074600-22075000	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr10:22074600-22077200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:22074600-22087000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:22074800-22086200	Weak transcription	K562	blood
45	chr10:22074800-22086800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:22074800-22089800	Weak transcription	Fetal Intestine Small	intestine
47	chr10:22074800-22099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:22074800-22100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
50	chr10:22075000-22075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links