Variant report
| Variant | esv3390154 |
|---|---|
| Chromosome Location | chr10:26230678-26231161 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs187014139 | chr10:26230756-26230757 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs78500785 | chr10:26230782-26230783 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs191154378 | chr10:26230798-26230799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs549829812 | chr10:26230803-26230804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs183454465 | chr10:26230824-26230825 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs11014873 | chr10:26230831-26230832 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs142477479 | chr10:26230850-26230851 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs565434015 | chr10:26230869-26230870 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs544396048 | chr10:26230888-26230889 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs534439140 | chr10:26230897-26230898 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs560648824 | chr10:26230920-26230921 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs151243879 | chr10:26230936-26230937 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs74866912 | chr10:26230937-26230938 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs577379444 | chr10:26230940-26230941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs540096596 | chr10:26230952-26230953 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs185868021 | chr10:26230954-26230955 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs549132520 | chr10:26230957-26230958 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs145958403 | chr10:26230969-26230970 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs542243925 | chr10:26230970-26230971 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs189994773 | chr10:26230990-26230991 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs371308506 | chr10:26230991-26230992 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs12260850 | chr10:26231002-26231003 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 23 | rs182356749 | chr10:26231035-26231036 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs564279300 | chr10:26231043-26231044 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs532987058 | chr10:26231069-26231070 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs139817540 | chr10:26231076-26231077 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs533375646 | chr10:26231086-26231087 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs10741105 | chr10:26231128-26231129 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 29 | rs529195845 | chr10:26231144-26231145 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:41)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| Breast cancer | 21364760 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26229800-26233600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
