Variant report

Variant	esv3390476
Chromosome Location	chr10:94017322-94020120
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:88 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567470683	chr10:94017332-94017333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs529716307	chr10:94017382-94017383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376568880	chr10:94017430-94017431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7098981	chr10:94017444-94017445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200543834	chr10:94017486-94017487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11418720	chr10:94017503-94017504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538238643	chr10:94017602-94017603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558571478	chr10:94017643-94017644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs4933229	chr10:94017666-94017667	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs189738052	chr10:94017683-94017684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12359038	chr10:94017691-94017692	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs575106653	chr10:94017717-94017718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147853642	chr10:94017733-94017734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs555340074	chr10:94017739-94017740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs557473183	chr10:94017776-94017777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371342831	chr10:94017784-94017785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545872299	chr10:94017793-94017794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559699289	chr10:94017886-94017887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs564840394	chr10:94017918-94017919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527559427	chr10:94017926-94017927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541341276	chr10:94017950-94017951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560880129	chr10:94017966-94017967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs529826652	chr10:94017984-94017985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374485261	chr10:94018028-94018029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs549606050	chr10:94018040-94018041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141407562	chr10:94018068-94018069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs532083168	chr10:94018071-94018072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs572359936	chr10:94018147-94018148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs551848653	chr10:94018195-94018196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565685030	chr10:94018213-94018214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534977701	chr10:94018250-94018251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10654687	chr10:94018381-94018382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11383899	chr10:94018383-94018384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs199901419	chr10:94018384-94018385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200777163	chr10:94018385-94018386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11286080	chr10:94018386-94018387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528907334	chr10:94018433-94018434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs56316802	chr10:94018436-94018437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs541080926	chr10:94018453-94018454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564574581	chr10:94018491-94018492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568803508	chr10:94018501-94018502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs55847450	chr10:94018517-94018518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs537629437	chr10:94018522-94018523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs557632222	chr10:94018537-94018538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577363477	chr10:94018567-94018568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539939927	chr10:94018621-94018622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181292879	chr10:94018624-94018625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573172565	chr10:94018630-94018631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186809893	chr10:94018696-94018697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138106733	chr10:94018755-94018756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94000800-94024200	Weak transcription	Gastric	stomach
2	chr10:94018400-94027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:94019600-94019800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:94019800-94020800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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