Variant report

Variant	esv3391568
Chromosome Location	chr10:20057346-20059644
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NEBL-3	chr10:20057340-20057485	NONHSAT011670
2	lnc-NEBL-3	chr10:20057340-20057485	ucscGeneNc_uc001iqf_2
3	lnc-NEBL-3	chr10:20057340-20057485	NONHSAT011671
4	lnc-NEBL-3	chr10:20057340-20057485	NONHSAT011672

Extended variants
information (count: 128 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578046774	chr10:20057357-20057358	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs191575027	chr10:20057379-20057380	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs556861557	chr10:20057393-20057394	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs79483607	chr10:20057464-20057465	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs542939554	chr10:20057470-20057471	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs183356604	chr10:20057521-20057522	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113158153	chr10:20057563-20057564	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553441574	chr10:20057591-20057592	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187606590	chr10:20057612-20057613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574791862	chr10:20057623-20057624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149736726	chr10:20057691-20057692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs532089860	chr10:20057747-20057748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372802066	chr10:20057778-20057779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550686431	chr10:20057818-20057819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs77170821	chr10:20057880-20057881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531059675	chr10:20057892-20057893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192436124	chr10:20057919-20057920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113326157	chr10:20057960-20057961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs534984637	chr10:20057986-20057987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117018911	chr10:20058005-20058006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs184983088	chr10:20058039-20058040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555872634	chr10:20058063-20058064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs957768	chr10:20058072-20058073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs117391818	chr10:20058075-20058076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111641616	chr10:20058116-20058117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542304127	chr10:20058156-20058157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs371421057	chr10:20058193-20058194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs118137287	chr10:20058265-20058266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs563513872	chr10:20058267-20058268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79019446	chr10:20058273-20058274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs74604681	chr10:20058293-20058294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186641845	chr10:20058294-20058295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540551144	chr10:20058316-20058317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145634272	chr10:20058356-20058357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377550116	chr10:20058359-20058360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192345654	chr10:20058376-20058377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs543972066	chr10:20058380-20058381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562247152	chr10:20058382-20058383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201221387	chr10:20058409-20058410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568900841	chr10:20058412-20058413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201484465	chr10:20058414-20058415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs199787750	chr10:20058416-20058417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370723992	chr10:20058417-20058418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200498433	chr10:20058418-20058419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62665760	chr10:20058419-20058420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11591643	chr10:20058420-20058421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs71388864	chr10:20058423-20058424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs71388865	chr10:20058424-20058425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572444795	chr10:20058428-20058429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61841489	chr10:20058456-20058457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Myelofibrosis	22110671	CNVD
Cancer	20164919	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:20046200-20080800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:20056400-20057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:20056400-20057600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:20056600-20057400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:20056600-20057400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:20056800-20057400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:20057400-20063400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:20058800-20059000	Enhancers	Placenta	Placenta

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