Variant report
| Variant | esv3391754 |
|---|---|
| Chromosome Location | chr2:178778598-178779060 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs370298666 | chr2:178778607-178778608 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs375735019 | chr2:178778609-178778610 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs7561059 | chr2:178778643-178778644 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs540420069 | chr2:178778684-178778685 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs77876731 | chr2:178778732-178778733 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs532394155 | chr2:178778761-178778762 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs114792635 | chr2:178778793-178778794 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs180841924 | chr2:178778794-178778795 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs531721676 | chr2:178778849-178778850 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs147307490 | chr2:178778864-178778865 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs568567168 | chr2:178778883-178778884 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs367835288 | chr2:178778924-178778925 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:49)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17603634 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 18522746 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Autism | 16446308 | CNVD |
| Autism | 19401682 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Glioblastoma | 21080181 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Sudden cardiac death | 19188705 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 18923514 | CNVD |
| Schizophrenia | 22241247 | CNVD |
| Mental retardation | 21062444 | CNVD |
| Facial dysmorphism | 20548289 | CNVD |
| Mental retardation | 20548289 | CNVD |
| Schizophrenia | 19348701 | CNVD |
| Muscular dystrophy | 17160897 | CNVD |
| Cardiomyopathy | 17576883 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178768600-178780000 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr2:178777600-178781200 | Enhancers | Skeletal Muscle Female | skeletal muscle |
| 3 | chr2:178778200-178780400 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 4 | chr2:178779000-178779400 | Enhancers | Fetal Heart | heart |
| 5 | chr2:178779000-178780400 | Enhancers | Colon Smooth Muscle | Colon |
