Variant report
| Variant | esv3392266 |
|---|---|
| Chromosome Location | chr3:109337462-109338560 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRAT1-10 | chr3:109337851-109338948 | l_2435_chr3:109326606-109338941_whiteBloodCell |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs183908076 | chr3:109337889-109337890 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs189127434 | chr3:109337939-109337940 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs564925875 | chr3:109338103-109338104 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs373909851 | chr3:109338128-109338129 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs16855810 | chr3:109338129-109338130 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 6 | rs77590456 | chr3:109338131-109338132 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs536341407 | chr3:109338185-109338186 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs556666714 | chr3:109338198-109338199 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs576541292 | chr3:109338212-109338213 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs545618029 | chr3:109338312-109338313 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs572216964 | chr3:109338323-109338324 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs539387287 | chr3:109338385-109338386 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs373043828 | chr3:109338403-109338404 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs10699314 | chr3:109338407-109338408 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs386664504 | chr3:109338408-109338409 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs55825807 | chr3:109338409-109338410 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs370424133 | chr3:109338410-109338411 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs58560354 | chr3:109338411-109338412 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs565544218 | chr3:109338460-109338461 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs572799338 | chr3:109338472-109338473 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs34128768 | chr3:109338473-109338474 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs142488651 | chr3:109338551-109338552 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 23 | rs566322357 | chr3:109338556-109338557 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 24 | rs371317926 | chr3:109338559-109338560 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:57)
| Disease | PMID | Source |
|---|---|---|
| Basal cell lymphoma | 17053054 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Uveal melanoma | 21693616 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Cancer | 21183584 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Bipolar disorder | 20877625 | CNVD |
| Bipolar disorder | 21956041 | CNVD |
| Bipolar disorder | 22241247 | CNVD |
| Biliary cancer | 18923514 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Cancer | 21129771 | CNVD |
| Congenital diaphragmatic hernia | 21085971 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Melanoma | 18172304 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Bipolar disorder | 18458673 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Breast cancer | 16461572 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| microdeletion syndrome | 22180640 | CNVD |
| Cervical Cancer | 21857958 | CNVD |
| Melanoma | 21693616 | CNVD |
| Lung cancer | 21426551 | CNVD |
| Cancer | 21637783 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Cancer | 22065749 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Breast cancer | 16608533 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Developmental delay | 22180640 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Ductal carcinoma | 22052326 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
