Variant report

Variant	esv3393517
Chromosome Location	chr11:3673876-3677074
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ART1-4	chr11:3676734-3676885	NONHSAT017608

Extended variants
information (count: 275 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:275 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559954795	chr11:3673915-3673916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530236720	chr11:3673923-3673924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs140167557	chr11:3673933-3673934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs199536056	chr11:3673935-3673936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs563738687	chr11:3673936-3673937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373564637	chr11:3673955-3673956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374583488	chr11:3673959-3673960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190949971	chr11:3673993-3673994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs530802954	chr11:3674018-3674019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550097132	chr11:3674035-3674036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571212440	chr11:3674054-3674055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs532234888	chr11:3674063-3674064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs367796761	chr11:3674091-3674092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs565510370	chr11:3674095-3674096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs536373948	chr11:3674126-3674127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554351247	chr11:3674148-3674149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182420174	chr11:3674211-3674212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536638635	chr11:3674223-3674224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558538013	chr11:3674233-3674234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs61878543	chr11:3674256-3674257	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs186768539	chr11:3674270-3674271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553633845	chr11:3674290-3674291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192802362	chr11:3674291-3674292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs542353130	chr11:3674292-3674293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs563629268	chr11:3674297-3674298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs150814173	chr11:3674314-3674315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530987974	chr11:3674315-3674316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs139249338	chr11:3674325-3674326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545803030	chr11:3674326-3674327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs150022508	chr11:3674339-3674340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs372021450	chr11:3674350-3674351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532294053	chr11:3674384-3674385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11028783	chr11:3674399-3674400	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs541751544	chr11:3674418-3674419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565572128	chr11:3674449-3674450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529839801	chr11:3674472-3674473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113157182	chr11:3674475-3674476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183291932	chr11:3674478-3674479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574984967	chr11:3674484-3674485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187813983	chr11:3674487-3674488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111833159	chr11:3674491-3674492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537106860	chr11:3674494-3674495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs193168213	chr11:3674508-3674509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs7482562	chr11:3674509-3674510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs535377028	chr11:3674510-3674511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs575025042	chr11:3674537-3674538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542062887	chr11:3674577-3674578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs111607614	chr11:3674578-3674579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs557489228	chr11:3674603-3674604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs535133946	chr11:3674614-3674615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	17440070	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3669200-3680200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:3669200-3681400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:3671000-3674600	Weak transcription	K562	blood
4	chr11:3671000-3686800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:3673000-3687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:3674600-3675000	Enhancers	K562	blood
7	chr11:3675200-3675400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:3676400-3676600	Enhancers	Right Ventricle	heart
9	chr11:3676800-3677000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:3676800-3685400	Weak transcription	Right Ventricle	heart

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